BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1036 (771 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 30 0.42 SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 29 0.74 SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc... 26 5.2 SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc... 26 5.2 SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos... 25 9.1 >SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces pombe|chr 3|||Manual Length = 973 Score = 29.9 bits (64), Expect = 0.42 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = -2 Query: 368 KRIRPTGDTSKEKQNCLFLYNSEHFHIYSPFKPSLDFHNN-SRLKLSKSVQPFSSFSET 195 KR+ T ++S K+N +N+ + P KP LD+H++ S K F S T Sbjct: 52 KRVSITSESSFYKENTFAHHNTTGSNSVGPKKPFLDYHHSTSNTPTKKKKDSFDHASVT 110 >SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Schizosaccharomyces pombe|chr 1|||Manual Length = 1995 Score = 29.1 bits (62), Expect = 0.74 Identities = 12/32 (37%), Positives = 20/32 (62%) Frame = -2 Query: 299 HFHIYSPFKPSLDFHNNSRLKLSKSVQPFSSF 204 H +++SP P +D + +SRLK + +P SF Sbjct: 1066 HSNLHSPVSPVVDSNEDSRLKFLSTQRPAFSF 1097 >SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 435 Score = 26.2 bits (55), Expect = 5.2 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Frame = +3 Query: 411 LSIEALRSLAGQLVFNKALRLRNYL--SLTIIK 503 LS E + S AG FNK + L+N+L S TI K Sbjct: 11 LSYEEIASRAGAFDFNKNIPLKNWLRTSTTISK 43 >SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosaccharomyces pombe|chr 1|||Manual Length = 390 Score = 26.2 bits (55), Expect = 5.2 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%) Frame = -3 Query: 718 YFYALPTTYLGDYIFND----SNNMKIKI*GKEFYLSTIFKVY 602 +FY L +LG YI+ SN K+ ++Y+S +FK Y Sbjct: 162 FFYYLCFWFLGLYIYRSSNYWSNEEKLFEDYPQYYMSPLFKAY 204 >SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizosaccharomyces pombe|chr 1|||Manual Length = 372 Score = 25.4 bits (53), Expect = 9.1 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = +2 Query: 647 FNFHVIRVVKNIVSQIRGRKRIKIRSFNVN 736 F FH+ V + V K+ K+RSF +N Sbjct: 149 FTFHLFNHVMDSVVPFDEAKKFKVRSFPIN 178 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,727,679 Number of Sequences: 5004 Number of extensions: 50465 Number of successful extensions: 113 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 111 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 113 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 371330890 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -