Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1036
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    30   0.42 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    29   0.74 
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    26   5.2  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    26   5.2  
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    25   9.1  

>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -2

Query: 368 KRIRPTGDTSKEKQNCLFLYNSEHFHIYSPFKPSLDFHNN-SRLKLSKSVQPFSSFSET 195
           KR+  T ++S  K+N    +N+   +   P KP LD+H++ S     K    F   S T
Sbjct: 52  KRVSITSESSFYKENTFAHHNTTGSNSVGPKKPFLDYHHSTSNTPTKKKKDSFDHASVT 110


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 299  HFHIYSPFKPSLDFHNNSRLKLSKSVQPFSSF 204
            H +++SP  P +D + +SRLK   + +P  SF
Sbjct: 1066 HSNLHSPVSPVVDSNEDSRLKFLSTQRPAFSF 1097


>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 411 LSIEALRSLAGQLVFNKALRLRNYL--SLTIIK 503
           LS E + S AG   FNK + L+N+L  S TI K
Sbjct: 11  LSYEEIASRAGAFDFNKNIPLKNWLRTSTTISK 43


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -3

Query: 718 YFYALPTTYLGDYIFND----SNNMKIKI*GKEFYLSTIFKVY 602
           +FY L   +LG YI+      SN  K+     ++Y+S +FK Y
Sbjct: 162 FFYYLCFWFLGLYIYRSSNYWSNEEKLFEDYPQYYMSPLFKAY 204


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 647 FNFHVIRVVKNIVSQIRGRKRIKIRSFNVN 736
           F FH+   V + V      K+ K+RSF +N
Sbjct: 149 FTFHLFNHVMDSVVPFDEAKKFKVRSFPIN 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,679
Number of Sequences: 5004
Number of extensions: 50465
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)