Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1036
         (771 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,167...    28   7.2  
11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,172...    28   7.2  

>12_01_0222 -
           1675077-1675289,1675476-1675553,1675943-1676002,
           1676103-1676206,1676321-1676479,1676768-1676894,
           1677569-1677736,1677890-1678000,1678090-1678243,
           1678409-1678744,1678854-1679038,1679141-1679239,
           1679376-1679639,1679776-1679952,1680351-1680644,
           1680753-1680920,1681574-1681918,1682002-1682171,
           1682272-1682422,1683296-1683365,1683456-1683640,
           1683999-1684092,1684195-1684313,1684658-1684717,
           1684844-1684930,1685631-1685717,1685905-1686013,
           1686105-1686183,1686350-1686437,1686611-1686675,
           1687570-1687722,1688514-1688620,1688702-1688784,
           1688926-1689016,1689095-1689231,1689612-1689701,
           1689795-1689962,1690366-1690560
          Length = 1809

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 197 SR*NSRTAGPIWIILVLNYCGSPEKV 274
           SR   R AG +W++ +  YCG   K+
Sbjct: 878 SRKEERCAGTVWLVSLTMYCGQHPKI 903


>11_01_0221 -
           1720952-1721164,1721351-1721428,1721836-1721895,
           1721996-1722099,1722214-1722372,1722668-1722794,
           1723469-1723636,1723789-1723899,1723989-1724142,
           1724308-1724643,1724753-1724937,1725040-1725138,
           1725275-1725538,1725674-1725850,1726249-1726542,
           1726649-1726816,1727473-1727817,1727901-1728070,
           1728171-1728321,1729193-1729262,1729353-1729537,
           1729896-1729989,1730094-1730212,1730558-1730617,
           1730744-1730830,1732348-1732434,1732622-1732730,
           1732822-1732900,1733067-1733154,1733328-1733392,
           1734287-1734439,1735231-1735337,1735419-1735501,
           1735643-1735733,1735812-1735948,1736118-1736207,
           1736301-1736468,1736875-1737057
          Length = 1805

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 197 SR*NSRTAGPIWIILVLNYCGSPEKV 274
           SR   R AG +W++ +  YCG   K+
Sbjct: 874 SRKEERCAGTVWLVSLTMYCGQHPKI 899


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,061,646
Number of Sequences: 37544
Number of extensions: 243026
Number of successful extensions: 400
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)