Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1036
         (771 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021489-1|CAA16369.2|  325|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z30317-4|CAB54306.1|  378|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>AL021489-1|CAA16369.2|  325|Caenorhabditis elegans Hypothetical
           protein Y44A6C.1 protein.
          Length = 325

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 596 VSIYLKNSGEVKFLTLNFNFHVIRVVKNIVSQIRGRKRIKIRSFNV 733
           V   LKN+  V  L LNF    ++ +  ++ ++     +K++SF V
Sbjct: 107 VRFVLKNARSVANLELNFEDVNLKALNRVLDEVLNSDHVKLKSFRV 152


>Z30317-4|CAB54306.1|  378|Caenorhabditis elegans Hypothetical
           protein T16G12.8 protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = +2

Query: 215 TAGPIWIILVLNYCGSPEKV*KVNKYENAR--NYIKTNNF--VFPLMCPLSDGFFCFFNF 382
           T GPIWII   N  G+PE++  V ++ +     +I+   +  +F L   L  GF+    F
Sbjct: 294 TLGPIWIIFEFN-TGAPEQIRLVMEHGDTHEMEFIQRLGYCILFELTLILDAGFYAIQMF 352

Query: 383 I 385
           +
Sbjct: 353 L 353


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,472,437
Number of Sequences: 27780
Number of extensions: 264757
Number of successful extensions: 563
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)