Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1036
         (771 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   7.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   7.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   7.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   7.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   7.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   7.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.6  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 553 IIFEIFMILTKSQTFITLI 497
           +IF I  ILT + T +TL+
Sbjct: 31  LIFTILCILTLALTLVTLV 49


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 553 IIFEIFMILTKSQTFITLI 497
           +IF I  ILT + T +TL+
Sbjct: 31  LIFTILCILTLALTLVTLV 49


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 553 IIFEIFMILTKSQTFITLI 497
           +IF I  ILT + T +TL+
Sbjct: 31  LIFTILCILTLALTLVTLV 49


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 553 IIFEIFMILTKSQTFITLI 497
           +IF I  ILT + T +TL+
Sbjct: 31  LIFTILCILTLALTLVTLV 49


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +2

Query: 554 TYVSLKVYRHISITVSIYLKNSGEVKFLTLNFNF 655
           TYV+L +       ++++L+ S   + +  N NF
Sbjct: 249 TYVTLTIVLMTMTLMTLWLEPSSTERMIIANLNF 282


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 334 KNKIVCFYIIPSIFIFIHLLNLLW 263
           KN   C Y+ P IF     +++ W
Sbjct: 131 KNNGTCLYVPPGIFKSTCKIDITW 154


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 299  HFHIYSPFKPSLD 261
            + H+Y+P K SLD
Sbjct: 998  NLHVYAPLKISLD 1010


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,241
Number of Sequences: 438
Number of extensions: 3781
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)