BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1036 (771 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 22 7.3 DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 22 7.3 DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 22 7.3 DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 22 7.3 DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 22 7.3 AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 7.3 AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 21 9.6 >DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride channel variant 4 protein. Length = 489 Score = 21.8 bits (44), Expect = 7.3 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = -3 Query: 553 IIFEIFMILTKSQTFITLI 497 +IF I ILT + T +TL+ Sbjct: 31 LIFTILCILTLALTLVTLV 49 >DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride channel variant 3 protein. Length = 475 Score = 21.8 bits (44), Expect = 7.3 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = -3 Query: 553 IIFEIFMILTKSQTFITLI 497 +IF I ILT + T +TL+ Sbjct: 31 LIFTILCILTLALTLVTLV 49 >DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride channel variant 1 protein. Length = 509 Score = 21.8 bits (44), Expect = 7.3 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = -3 Query: 553 IIFEIFMILTKSQTFITLI 497 +IF I ILT + T +TL+ Sbjct: 31 LIFTILCILTLALTLVTLV 49 >DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride channel protein. Length = 458 Score = 21.8 bits (44), Expect = 7.3 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = -3 Query: 553 IIFEIFMILTKSQTFITLI 497 +IF I ILT + T +TL+ Sbjct: 31 LIFTILCILTLALTLVTLV 49 >DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine receptor beta2subunit protein. Length = 427 Score = 21.8 bits (44), Expect = 7.3 Identities = 9/34 (26%), Positives = 18/34 (52%) Frame = +2 Query: 554 TYVSLKVYRHISITVSIYLKNSGEVKFLTLNFNF 655 TYV+L + ++++L+ S + + N NF Sbjct: 249 TYVTLTIVLMTMTLMTLWLEPSSTERMIIANLNF 282 >AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic acetylcholine receptoralpha7-1 protein. Length = 555 Score = 21.8 bits (44), Expect = 7.3 Identities = 8/24 (33%), Positives = 12/24 (50%) Frame = -3 Query: 334 KNKIVCFYIIPSIFIFIHLLNLLW 263 KN C Y+ P IF +++ W Sbjct: 131 KNNGTCLYVPPGIFKSTCKIDITW 154 >AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor protein. Length = 1770 Score = 21.4 bits (43), Expect = 9.6 Identities = 7/13 (53%), Positives = 10/13 (76%) Frame = -2 Query: 299 HFHIYSPFKPSLD 261 + H+Y+P K SLD Sbjct: 998 NLHVYAPLKISLD 1010 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 183,241 Number of Sequences: 438 Number of extensions: 3781 Number of successful extensions: 10 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 10 length of database: 146,343 effective HSP length: 57 effective length of database: 121,377 effective search space used: 24154023 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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