Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1035
         (351 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q22VA7 Cluster: 3'5'-cyclic nucleotide phosphodiesteras...    32   2.4  
UniRef50_A2Q223 Cluster: Lactate/malate dehydrogenase, alpha/bet...    31   7.2  
UniRef50_Q19BA1 Cluster: 23 kDa protein; n=2; Gallid herpesvirus...    30   9.5  

>UniRef50_Q22VA7 Cluster: 3'5'-cyclic nucleotide phosphodiesterase
           family protein; n=1; Tetrahymena thermophila SB210|Rep:
           3'5'-cyclic nucleotide phosphodiesterase family protein
           - Tetrahymena thermophila SB210
          Length = 624

 Score = 32.3 bits (70), Expect = 2.4
 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = -1

Query: 231 IKLAIIKYLTKFDI-AIMSKQFQMH-Y*NHEMC 139
           IK+ +++ +TKFDI  + S  FQMH Y N E+C
Sbjct: 163 IKMNVLERMTKFDINQLKSHNFQMHLYTNKELC 195


>UniRef50_A2Q223 Cluster: Lactate/malate dehydrogenase, alpha/beta
           C-terminal domain containing protein; n=1; Medicago
           truncatula|Rep: Lactate/malate dehydrogenase, alpha/beta
           C-terminal domain containing protein - Medicago
           truncatula (Barrel medic)
          Length = 205

 Score = 30.7 bits (66), Expect = 7.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 219 IIKYLTKFDIAIMSKQFQMHY*NHEMCFNFLTNQLNNTEN 100
           + +Y+   D A+   +  +H  N ++C     N+LNNT N
Sbjct: 143 LYRYIMLIDAALNQFEIMVHKKNEKLCLTHGVNELNNTYN 182


>UniRef50_Q19BA1 Cluster: 23 kDa protein; n=2; Gallid herpesvirus
           2|Rep: 23 kDa protein - Meleagrid herpesvirus 1 (MeHV-1)
           (Turkey herpesvirus)
          Length = 208

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 12/39 (30%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
 Frame = +2

Query: 161 CIWNCLLIIAMSNFVR-YLIIANFIGNY-VIPIILNINV 271
           C+W+  ++I +SN++R YL I  +  +Y +  I++++ V
Sbjct: 159 CLWSTFVVIFLSNYIRSYLAIVRYACSYSICKIVIDVFV 197


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 263,421,789
Number of Sequences: 1657284
Number of extensions: 4175031
Number of successful extensions: 8245
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8223
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 11088517726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)