Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1035
         (351 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    28   0.49 
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   2.0  
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    24   6.0  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    24   6.0  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    24   7.9  

>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 27.9 bits (59), Expect = 0.49
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 127 QEIKTHFMISIVHLELFAHYSNVEFCKIFD 216
           Q ++  F  +  HL+LF H + + F K+F+
Sbjct: 291 QRLEEAFYYAEEHLKLFTHVTEISFVKLFE 320


>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -1

Query: 150 HEMCFNFLTNQL-NNTENQPA 91
           HE CF FL N   +N EN+ A
Sbjct: 48  HEQCFRFLANSCSDNNENRAA 68


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 205 YKIRHCYNEQTIPN 164
           +++ +CYN  T+PN
Sbjct: 30  HRVNYCYNYHTVPN 43


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 164 IWNCLLIIAMSNFVRYLIIANFIGNYVIPIILN 262
           +W  +L++A    +   + A  I NYV   +LN
Sbjct: 771 VWQAVLVLAADPSIEISLAAEAIINYVYQSMLN 803


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 195  DIAIMSKQFQMHY*NHEMCFNFLTNQLNNTENQP 94
            DIA +S    M    H +   +LTNQ NN E +P
Sbjct: 1712 DIAQISLTPMMVTDVHRLIKFYLTNQENNIEKRP 1745


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,187,948
Number of Sequences: 5004
Number of extensions: 19603
Number of successful extensions: 34
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)