Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1035
         (351 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38068| Best HMM Match : UreE_N (HMM E-Value=0.46)                   27   5.7  
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  

>SB_38068| Best HMM Match : UreE_N (HMM E-Value=0.46)
          Length = 413

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 195 DIAIMSKQFQMHY*NHEMCFNFLTNQL 115
           ++A+ S+QF +   NH   + F+ NQL
Sbjct: 37  NVALQSRQFFLQISNHSCVYYFIKNQL 63


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 109  IVELVGQEIKTH-FMISIVHLELFAHYSNVEFCKIFDNC*FY 231
            ++E+  Q +  H F++    L  F   + +E C++ D C  Y
Sbjct: 3021 LLEIASQPVDNHVFIMPYSKLASFVKRTKLEICQVADQCSSY 3062


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,189,651
Number of Sequences: 59808
Number of extensions: 131404
Number of successful extensions: 179
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)