Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1034
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   111   1e-25
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   111   1e-25
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    27   2.8  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    27   2.8  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    25   8.5  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  111 bits (267), Expect = 1e-25
 Identities = 56/79 (70%), Positives = 66/79 (83%), Gaps = 1/79 (1%)
 Frame = +1

Query: 250 LGLVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEG 426
           L L IV++G Q+IPGLTD  VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEG
Sbjct: 109 LALAIVKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEG 168

Query: 427 KENAKPRHKAPKIQRLVTP 483
           K   KP  KAPKIQRLVTP
Sbjct: 169 K---KPYTKAPKIQRLVTP 184



 Score =  108 bits (260), Expect = 7e-25
 Identities = 49/70 (70%), Positives = 56/70 (80%)
 Frame = +2

Query: 56  EWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVD 235
           E+ GYV ++ GGNDKQGFPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV 
Sbjct: 44  EFAGYVFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVG 103

Query: 236 ANLSVLVLLL 265
            +L+VL L +
Sbjct: 104 QDLAVLALAI 113


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  111 bits (266), Expect = 1e-25
 Identities = 55/79 (69%), Positives = 66/79 (83%), Gaps = 1/79 (1%)
 Frame = +1

Query: 250 LGLVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEG 426
           L L I+++G Q+IPGLTD  VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEG
Sbjct: 109 LALAIIKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEG 168

Query: 427 KENAKPRHKAPKIQRLVTP 483
           K   KP  KAPKIQRLVTP
Sbjct: 169 K---KPYTKAPKIQRLVTP 184



 Score =  108 bits (260), Expect = 7e-25
 Identities = 49/70 (70%), Positives = 56/70 (80%)
 Frame = +2

Query: 56  EWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVD 235
           E+ GYV ++ GGNDKQGFPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV 
Sbjct: 44  EFAGYVFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVG 103

Query: 236 ANLSVLVLLL 265
            +L+VL L +
Sbjct: 104 QDLAVLALAI 113


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
 Frame = -2

Query: 632 PPAFDLFLATHLGFLLSLCKQFSIFSLRGLALSET----LLLQSER*RLRCRTTGVTSLW 465
           P   D  +  +LG+     ++FS+ ++ G +         L+ S    + C   G+   W
Sbjct: 26  PVTEDDKMLLNLGYKQEFKREFSLLAVFGQSFGSMGLCPSLVGSMAFSMNCGAGGMVWSW 85

Query: 464 ILGALC-LGLAFSFPSLA 414
            +GA C L +AF+   LA
Sbjct: 86  FVGATCLLPIAFALSELA 103


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 691 VDHFCGALWLELLESRIEADRLRLIS 614
           +D F  + W+ L++SR + D+ RLIS
Sbjct: 335 LDEFFVSYWVSLIKSRKQKDKKRLIS 360


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 682 FCGALWLELLESRIEADRLRLISSW 608
           F G++W E L S      L+LI SW
Sbjct: 247 FTGSIWYEFLCSASSVVALQLIRSW 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,535
Number of Sequences: 5004
Number of extensions: 54119
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)