Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1034
(738 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 100 1e-21
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 99 3e-21
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296... 29 2.9
03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,589... 29 3.9
01_02_0020 - 10269252-10269314,10269442-10269483,10269759-102702... 29 3.9
02_05_0956 - 33064104-33066425 28 6.7
03_02_0109 + 5671418-5671631,5675610-5675690,5676249-5676340,567... 28 8.9
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 100 bits (239), Expect = 1e-21
Identities = 47/72 (65%), Positives = 59/72 (81%), Gaps = 2/72 (2%)
Frame = +2
Query: 56 EWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCI 229
E+KGYV ++ GG DKQGFPMKQGVLT+ RVRLL+ +G C+R RRDGER+RKSVRGCI
Sbjct: 44 EFKGYVFKIMGGCDKQGFPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCI 103
Query: 230 VDANLSVLVLLL 265
V +LSV+ L++
Sbjct: 104 VSQDLSVINLVI 115
Score = 94.3 bits (224), Expect = 9e-20
Identities = 49/81 (60%), Positives = 60/81 (74%), Gaps = 2/81 (2%)
Frame = +1
Query: 250 LGLVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKE 423
+ LVIV+KG ++PGLTD PR GPKRASKIRKLFNL+K+DDVR+YV +R K
Sbjct: 111 INLVIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKN 170
Query: 424 GKENAKPRHKAPKIQRLVTPV 486
GK+ + KAPKIQRLVTP+
Sbjct: 171 GKKVS----KAPKIQRLVTPL 187
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +3
Query: 558 EYAKLLAQRKKESKVRRQEEI 620
EY KLLAQR KE + RR E +
Sbjct: 212 EYQKLLAQRLKEQRERRSESL 232
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 99.1 bits (236), Expect = 3e-21
Identities = 47/72 (65%), Positives = 58/72 (80%), Gaps = 2/72 (2%)
Frame = +2
Query: 56 EWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCI 229
E+KGYV ++ GG DKQGFPMKQGVLT RVRLL+ +G C+R RRDGER+RKSVRGCI
Sbjct: 44 EFKGYVFKIMGGCDKQGFPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCI 103
Query: 230 VDANLSVLVLLL 265
V +LSV+ L++
Sbjct: 104 VSQDLSVINLVI 115
Score = 95.9 bits (228), Expect = 3e-20
Identities = 50/81 (61%), Positives = 60/81 (74%), Gaps = 2/81 (2%)
Frame = +1
Query: 250 LGLVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKE 423
+ LVIV+KG ++PGLTD PR GPKRASKIRKLFNLSK+DDVR+YV +R K
Sbjct: 111 INLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKN 170
Query: 424 GKENAKPRHKAPKIQRLVTPV 486
GK+ + KAPKIQRLVTP+
Sbjct: 171 GKKVS----KAPKIQRLVTPL 187
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +3
Query: 558 EYAKLLAQRKKESKVRRQEEI 620
EY KLLAQR KE + RR E +
Sbjct: 212 EYQKLLAQRLKEQRERRSESL 232
>10_07_0139 +
13327851-13327880,13327999-13329049,13329089-13329648,
13329757-13329904,13330935-13331024,13331148-13331208,
13331301-13331450,13331571-13331629,13332148-13332282,
13333028-13333119,13333210-13333278
Length = 814
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/53 (24%), Positives = 32/53 (60%)
Frame = +1
Query: 319 RLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLV 477
++ PK+A ++ + + +DD+ R V + +P+++ + A+ ++PK +R V
Sbjct: 325 KVEPKKAHCSDRISHKTTQDDMERKVPSKYIPSEKKGKTAESCSRSPKRERRV 377
>03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,
5890540-5890710,5890840-5891007,5891139-5891234,
5891777-5891839,5891949-5892114,5892207-5892274,
5892646-5892789,5893111-5893176,5893329-5893520,
5894567-5894657,5895241-5895329,5895521-5895583,
5895698-5895823,5895902-5895991,5896059-5896181,
5896503-5896619,5896704-5896904,5897643-5897723,
5897897-5897977,5898083-5898184,5898264-5898488,
5898571-5898726,5898798-5899010,5899306-5899455,
5900082-5900204,5900299-5900364,5900555-5900620,
5900686-5900817,5900891-5900965,5901355-5901438,
5901516-5901668,5901741-5901806,5902044-5902205,
5902272-5902388,5902495-5902566,5902702-5902761,
5902869-5902985,5904131-5904430,5904518-5904622,
5905710-5905775,5905853-5906297,5906399-5906567,
5906684-5906736,5906819-5906925
Length = 1981
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 278 APLRTITRPRPRDWRQQYIHEL 213
APL+ I R R DWRQ+ + +L
Sbjct: 1334 APLKAIVRERMNDWRQRLVTQL 1355
>01_02_0020 -
10269252-10269314,10269442-10269483,10269759-10270244,
10270338-10270421,10270491-10270556,10270718-10270810,
10270901-10271987,10273338-10273362,10273881-10273899
Length = 654
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 575 CTEKEGIQGASPGRDQTQAVSFN 643
C KE IQGA+PG Q Q + N
Sbjct: 599 CLNKEAIQGANPGDSQMQIIMQN 621
>02_05_0956 - 33064104-33066425
Length = 773
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1
Query: 420 LGWEHAFDDITTYIIFFAKV 361
+G EHA DD++TYII A V
Sbjct: 23 VGVEHATDDVSTYIIHVAHV 42
>03_02_0109 +
5671418-5671631,5675610-5675690,5676249-5676340,
5676433-5676513,5676594-5676691,5676872-5676953,
5677050-5677088
Length = 228
Score = 27.9 bits (59), Expect = 8.9
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = -1
Query: 450 MSGFSIFFSFLGWEHAFDDITTYIIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTL 271
++GF +FFSFLG FD +I + L+ G T G + ++ +N+ GT+
Sbjct: 104 LTGFGVFFSFLGIIFFFD---KGLIAMGNILFLSGLGLTIGLKSTMQF-FTKPKNYKGTI 159
Query: 270 A 268
+
Sbjct: 160 S 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,169,470
Number of Sequences: 37544
Number of extensions: 408211
Number of successful extensions: 1057
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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