Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1034
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              132   3e-31
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   31   0.74 
SB_35514| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.97 
SB_8663| Best HMM Match : DUF250 (HMM E-Value=9.3e-05)                 31   1.3  
SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011)                 30   2.3  
SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016)                 30   2.3  
SB_34552| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_24159| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)                     29   5.2  
SB_29318| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_3996| Best HMM Match : Connexin (HMM E-Value=2.4)                   28   6.9  
SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_27725| Best HMM Match : RVT_1 (HMM E-Value=1.9e-19)                 28   9.1  
SB_13840| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.1  
SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06)          28   9.1  
SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06)            28   9.1  
SB_36087| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_32833| Best HMM Match : RVT_1 (HMM E-Value=2)                       28   9.1  
SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)                     28   9.1  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  132 bits (319), Expect = 3e-31
 Identities = 57/70 (81%), Positives = 64/70 (91%)
 Frame = +2

Query: 56  EWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVD 235
           EWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+SKGHSCYRPRR GERKRKSVRGCIVD
Sbjct: 11  EWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVD 70

Query: 236 ANLSVLVLLL 265
           + LSVL L++
Sbjct: 71  SQLSVLSLVI 80



 Score =  122 bits (294), Expect = 3e-28
 Identities = 59/80 (73%), Positives = 67/80 (83%)
 Frame = +1

Query: 250 LGLVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGK 429
           L LVIV+KG Q+IPGLTD  +PRRLGPKR  KIRK+FNLSKEDDVR+YV++R LP KEGK
Sbjct: 76  LSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQYVIRRPLPEKEGK 135

Query: 430 ENAKPRHKAPKIQRLVTPVV 489
              K + KAPKIQRLVTPVV
Sbjct: 136 ---KAKSKAPKIQRLVTPVV 152



 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/21 (57%), Positives = 18/21 (85%)
 Frame = +3

Query: 558 EYAKLLAQRKKESKVRRQEEI 620
           +YAKLLA+R KE+K +R E++
Sbjct: 176 DYAKLLAKRAKEAKEKRHEQL 196


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -3

Query: 169 VAL*HQKTNTAVCQDALFHRESLLVVAASDTKYIALP 59
           V L  Q+ + A+  D L H +SL V+  SD + ++LP
Sbjct: 252 VTLGEQEADAAIGHDPLLHGKSLFVITTSDPEDVSLP 288


>SB_35514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 25/56 (44%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 28  ELVDPPGCR-*MEGLCTSCRWRQRQARIPDETGRPDKQPCSSSDVKGPL-MLQTAP 189
           ELVDPPGCR  ME   TS    Q     PD   R  +   +SSD  GP  M  +AP
Sbjct: 14  ELVDPPGCRNSMENARTSSPGFQGAYSAPDPF-RNSRGYSASSDGTGPQGMYPSAP 68


>SB_8663| Best HMM Match : DUF250 (HMM E-Value=9.3e-05)
          Length = 680

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -3

Query: 148 TNTAVCQDALFHRESLLVVAASDT--KYIALPFTCSPGDPLVXRAXRP 11
           +N   C  A+F  ++L+ + +S    K + +  +CSPGDPLV     P
Sbjct: 184 SNIDSCYTAVFIHKNLMKIISSPEICKTVNVSNSCSPGDPLVLERPPP 231


>SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011)
          Length = 515

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 383 YVVMSSNACSQPRKEKKMLNPDIRHLRSRG 472
           Y V  +  C+ PR   K+L P + HLR +G
Sbjct: 50  YSVFPNGLCTCPRNFTKLLKPPLSHLRLKG 79


>SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016)
          Length = 515

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 383 YVVMSSNACSQPRKEKKMLNPDIRHLRSRG 472
           Y V  +  C+ PR   K+L P + HLR +G
Sbjct: 50  YSVFPNGLCTCPRNFTKLLKPPLSHLRLKG 79


>SB_34552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -3

Query: 148 TNTAVCQDALFHRESLLVVAASDTKYIALPFTCSPGDPLVXRAXRP 11
           T+T +  + L+  + L+++ A+  K      +CSPGDPLV     P
Sbjct: 5   TDTLISANILYCNKQLVIIRATRRK--PQSNSCSPGDPLVLERPPP 48


>SB_24159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 106 SLLVVAASDTKYIALPFTCSPGDPLVXRAXRP 11
           SLL+++ S    + +  +CSPGDPLV     P
Sbjct: 4   SLLLISRSRPGRLLVSNSCSPGDPLVLERPPP 35


>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
          Length = 291

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 304 GNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVK 402
           G+   + GP + SKI K+    ++DDV+  VVK
Sbjct: 221 GSEAAKTGPNKLSKIDKVILAVEDDDVQEIVVK 253


>SB_29318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 106 SLLVVAASDTKYIALPFTCSPGDPLVXRAXRP 11
           ++L  A  + +++A   +CSPGDPLV     P
Sbjct: 10  AVLTPAPVERQHVAASNSCSPGDPLVLERPPP 41


>SB_3996| Best HMM Match : Connexin (HMM E-Value=2.4)
          Length = 205

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 28  ELVDPPGCR-*MEGLCTSCRWRQRQARIPDETGRPD 132
           ELVDPPGCR  M+ +      + R+ +  ++T + D
Sbjct: 14  ELVDPPGCRNSMDDIALLSSTKDREKKTKEKTAKLD 49


>SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +1

Query: 352 KLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQR 471
           + F+++KEDD+  Y++   L  +  K NA   ++ P+  R
Sbjct: 137 RAFDVTKEDDITMYIIITPLFMRARKNNAMEYNQKPRDPR 176


>SB_27725| Best HMM Match : RVT_1 (HMM E-Value=1.9e-19)
          Length = 262

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 453 LMSGFSIFFSFLGWEHAFDDITTYIIFFA 367
           L  G S+FF+F+  E AFD +   II++A
Sbjct: 91  LAKGKSLFFAFVDLEKAFDRVPRDIIWWA 119


>SB_13840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 97 VVAASDTKYIALPF-TCSPGDPLVXRAXRP 11
          +++A+   YI  P  +CSPGDPLV     P
Sbjct: 8  LISANIVSYIGPPSNSCSPGDPLVLERPPP 37


>SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 949

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 453 LMSGFSIFFSFLGWEHAFDDITTYIIFFA 367
           L  G S+FF+F+  E AFD +   I+++A
Sbjct: 628 LAKGKSLFFAFVDLEKAFDRVPRVILWWA 656


>SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06)
          Length = 609

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 453 LMSGFSIFFSFLGWEHAFDDITTYIIFFA 367
           L  G S+FF+F+  E AFD +   I+++A
Sbjct: 545 LAKGKSLFFAFVDLEKAFDRVPRVILWWA 573


>SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06)
          Length = 757

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
 Frame = +1

Query: 271 KGAQEIPGLTDGNV----PRRLGPK---RASKIRKLFNLSKEDDVRRYVVKRVLPAKEGK 429
           +GA+++P L +G V    P + G K   R++ +++L     E DVR +   RV   ++  
Sbjct: 267 RGARDVPPLEEGGVVRMRPFKFGKKHWDRSTVVKRLGEYEVETDVRTHRRHRVGLKEQNL 326

Query: 430 ENAKPRHKAP 459
             A P+   P
Sbjct: 327 PPATPQEADP 336


>SB_36087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 94 VAASDTKYIALPFTCSPGDPLVXRAXRP 11
          + + D +  AL  +CSPGDPLV     P
Sbjct: 3  IVSLDRESYALSNSCSPGDPLVLERPPP 30


>SB_32833| Best HMM Match : RVT_1 (HMM E-Value=2)
          Length = 317

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 453 LMSGFSIFFSFLGWEHAFDDITTYIIFFA 367
           L  G S+FF+F+  E AFD +   I+++A
Sbjct: 196 LAKGKSLFFAFVDLEKAFDRVPRVILWWA 224


>SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)
          Length = 1101

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 337 ASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPR 447
           A  ++ + +    DDV+  ++K ++P KEG E+  P+
Sbjct: 22  AGLVQNILDEDIPDDVKHRLLKPLVPEKEGPESLDPK 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,505,539
Number of Sequences: 59808
Number of extensions: 448230
Number of successful extensions: 2181
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2180
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)