Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1034
         (738 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)              97   1e-20
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...    97   1e-20
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051...    30   1.4  
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica...    28   7.4  

>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 47/72 (65%), Positives = 57/72 (79%), Gaps = 2/72 (2%)
 Frame = +2

Query: 56  EWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCI 229
           E+KGYV ++ GG DKQGFPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCI
Sbjct: 44  EFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCI 103

Query: 230 VDANLSVLVLLL 265
           V  +LSVL L++
Sbjct: 104 VSPDLSVLNLVI 115



 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 51/81 (62%), Positives = 60/81 (74%), Gaps = 2/81 (2%)
 Frame = +1

Query: 250 LGLVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKE 423
           L LVIV+KG  ++PGLTD   PR  GPKRASKIRKLFNL KEDDVR+YV   +R    K+
Sbjct: 111 LNLVIVKKGVSDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKK 170

Query: 424 GKENAKPRHKAPKIQRLVTPV 486
           GK+ +    KAPKIQRLVTP+
Sbjct: 171 GKKVS----KAPKIQRLVTPL 187


>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 47/72 (65%), Positives = 57/72 (79%), Gaps = 2/72 (2%)
 Frame = +2

Query: 56  EWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCI 229
           E+KGYV ++ GG DKQGFPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCI
Sbjct: 44  EFKGYVFKIKGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCI 103

Query: 230 VDANLSVLVLLL 265
           V  +LSVL L++
Sbjct: 104 VSPDLSVLNLVI 115



 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 52/81 (64%), Positives = 59/81 (72%), Gaps = 2/81 (2%)
 Frame = +1

Query: 250 LGLVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKE 423
           L LVIV+KG  ++PGLTD   PR  GPKRASKIRKLFNL KEDDVR YV   +R    K+
Sbjct: 111 LNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKK 170

Query: 424 GKENAKPRHKAPKIQRLVTPV 486
           GKE +    KAPKIQRLVTP+
Sbjct: 171 GKEVS----KAPKIQRLVTPL 187


>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
           Krr1 family
          Length = 638

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +1

Query: 295 LTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRV--LPAKEGKENAK 441
           + +G+V ++   ++A +  K   + KEDDVR+  +KR+  +  KE KE  K
Sbjct: 288 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKKKEIKEKMK 338


>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to RAD54
           [Drosophila melanogaster] GI:1765914; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 888

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 283 EIPGLTDGNVPRRLGPKRASKIRKL 357
           E+PGL D  V   L PK+ ++++KL
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKL 644


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,780,865
Number of Sequences: 28952
Number of extensions: 305312
Number of successful extensions: 810
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)