BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1033 (736 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces pom... 29 0.52 SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 4.8 SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 26 4.8 SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 26 6.4 SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 26 6.4 SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce... 25 8.5 SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S... 25 8.5 SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 25 8.5 SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 25 8.5 >SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 247 Score = 29.5 bits (63), Expect = 0.52 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Frame = -1 Query: 574 LPALEMNVTEPFDLEHGGDVYGEPC--LSFSDI 482 LP E+ T+PF LE + G+PC L+F DI Sbjct: 114 LPPFELIATDPFTLEAYTNRIGKPCLTLNFQDI 146 >SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 315 Score = 26.2 bits (55), Expect = 4.8 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = +2 Query: 407 GQREVGGQRISTNVNRQNTHPEEGIDIGER 496 G E+GG + N RQ P +GI ER Sbjct: 258 GSTEIGGDAVWVNAVRQGGDPLQGISPQER 287 >SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1000 Score = 26.2 bits (55), Expect = 4.8 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = +2 Query: 647 PSSPALRHDLALLADQLHTCKLMLDEEKQ 733 PS P+ L Q H CK + D++KQ Sbjct: 840 PSRPSANPYLLYQKTQWHVCKTLADQDKQ 868 >SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces pombe|chr 2|||Manual Length = 547 Score = 25.8 bits (54), Expect = 6.4 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = +3 Query: 381 NTPVQLSETDNEKLADSEYLQTLIDKIHILKKE 479 NTP+ +E DN L + +++HI K E Sbjct: 110 NTPLYFNENDNAFLISTNAYSAAQERLHIWKHE 142 >SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Schizosaccharomyces pombe|chr 1|||Manual Length = 515 Score = 25.8 bits (54), Expect = 6.4 Identities = 10/31 (32%), Positives = 14/31 (45%) Frame = -3 Query: 149 TECDCSISANFC*SLTNWAGVSTVRASARCS 57 T C + N+C NW V +V + CS Sbjct: 446 TLCTVFSAPNYCGEFDNWGAVMSVNSELLCS 476 >SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces pombe|chr 1|||Manual Length = 371 Score = 25.4 bits (53), Expect = 8.5 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +3 Query: 432 EYLQTLIDKIHILKKELISEND 497 +Y QTL D++ LK + END Sbjct: 37 DYKQTLNDRLTSLKNNFVEEND 58 >SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |Schizosaccharomyces pombe|chr 2|||Manual Length = 389 Score = 25.4 bits (53), Expect = 8.5 Identities = 17/61 (27%), Positives = 26/61 (42%) Frame = -1 Query: 445 VCRYSLSANFSLSVSLSWTGVFSSIVAGAIFSSSLPFIESLSCCISCWSRRLLKSYCPIV 266 + R AN LS+ F + G + S S PF + ++ I+ W + SY V Sbjct: 247 IARAGGMANIESDSGLSYAKQF--VGNGTLPSGSFPFWDEVASAIAAWPEIVNSSYDAYV 304 Query: 265 S 263 S Sbjct: 305 S 305 >SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 480 Score = 25.4 bits (53), Expect = 8.5 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 5/36 (13%) Frame = +1 Query: 112 QQKLALIE-QSHSV----AIREEQIKAKRAEESARK 204 ++++ LIE Q H +++EQI AKR EE AR+ Sbjct: 149 KERIRLIEEQKHKENEQRRLKQEQIDAKRKEEEARE 184 >SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 834 Score = 25.4 bits (53), Expect = 8.5 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +3 Query: 396 LSETDNEKLADSEYLQTLIDKIHILKKELISEN 494 LS T KL E +Q +ID +HI + E+ +EN Sbjct: 226 LSATPGNKL---EAIQNVIDSLHISRIEIRTEN 255 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,336,360 Number of Sequences: 5004 Number of extensions: 39461 Number of successful extensions: 143 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 139 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 143 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 347244562 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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