Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1033
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces pom...    29   0.52 
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.8  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    26   4.8  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    26   6.4  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    26   6.4  
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce...    25   8.5  
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S...    25   8.5  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    25   8.5  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    25   8.5  

>SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -1

Query: 574 LPALEMNVTEPFDLEHGGDVYGEPC--LSFSDI 482
           LP  E+  T+PF LE   +  G+PC  L+F DI
Sbjct: 114 LPPFELIATDPFTLEAYTNRIGKPCLTLNFQDI 146


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 407 GQREVGGQRISTNVNRQNTHPEEGIDIGER 496
           G  E+GG  +  N  RQ   P +GI   ER
Sbjct: 258 GSTEIGGDAVWVNAVRQGGDPLQGISPQER 287


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 647 PSSPALRHDLALLADQLHTCKLMLDEEKQ 733
           PS P+    L     Q H CK + D++KQ
Sbjct: 840 PSRPSANPYLLYQKTQWHVCKTLADQDKQ 868


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 381 NTPVQLSETDNEKLADSEYLQTLIDKIHILKKE 479
           NTP+  +E DN  L  +       +++HI K E
Sbjct: 110 NTPLYFNENDNAFLISTNAYSAAQERLHIWKHE 142


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -3

Query: 149 TECDCSISANFC*SLTNWAGVSTVRASARCS 57
           T C    + N+C    NW  V +V +   CS
Sbjct: 446 TLCTVFSAPNYCGEFDNWGAVMSVNSELLCS 476


>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 432 EYLQTLIDKIHILKKELISEND 497
           +Y QTL D++  LK   + END
Sbjct: 37  DYKQTLNDRLTSLKNNFVEEND 58


>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 389

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = -1

Query: 445 VCRYSLSANFSLSVSLSWTGVFSSIVAGAIFSSSLPFIESLSCCISCWSRRLLKSYCPIV 266
           + R    AN      LS+   F  +  G + S S PF + ++  I+ W   +  SY   V
Sbjct: 247 IARAGGMANIESDSGLSYAKQF--VGNGTLPSGSFPFWDEVASAIAAWPEIVNSSYDAYV 304

Query: 265 S 263
           S
Sbjct: 305 S 305


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
 Frame = +1

Query: 112 QQKLALIE-QSHSV----AIREEQIKAKRAEESARK 204
           ++++ LIE Q H       +++EQI AKR EE AR+
Sbjct: 149 KERIRLIEEQKHKENEQRRLKQEQIDAKRKEEEARE 184


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 396 LSETDNEKLADSEYLQTLIDKIHILKKELISEN 494
           LS T   KL   E +Q +ID +HI + E+ +EN
Sbjct: 226 LSATPGNKL---EAIQNVIDSLHISRIEIRTEN 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,336,360
Number of Sequences: 5004
Number of extensions: 39461
Number of successful extensions: 143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)