Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1033
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1236 + 25454371-25456801,25456891-25457177,25457258-254574...    29   5.1  
04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92...    28   6.7  
01_06_1765 + 39735629-39736240                                         28   6.7  
04_01_0308 + 4188726-4190351                                           28   8.8  

>08_02_1236 + 25454371-25456801,25456891-25457177,25457258-25457416,
            25457561-25457740,25457823-25458017,25459059-25459157,
            25459508-25460137,25460250-25460591
          Length = 1440

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +1

Query: 106  RLQQKLALIEQSHSVAIREEQIKAKRAEESARKICARQEER 228
            R +Q+L L  Q+  +AIREE+++ ++A     ++   Q+ +
Sbjct: 1255 RTEQELELSRQAAELAIREEELRQEKAAAEKERLRLEQKAK 1295


>04_01_0084 -
           912255-912368,912738-912822,914050-917105,920290-920508
          Length = 1157

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -1

Query: 508 EPCLSFSDINSFFRMCILSINVCRYSLSANFSLSVSLSWTGVFSSIVAGAIFSSSLPFIE 329
           +PCL    +N F    +L  +  R   S  +  S S+ WT     IVAG+I  ++   I+
Sbjct: 36  QPCLGSVHVNLFHGWKLLRAHALRTRESIQWQCSGSVQWT----RIVAGSIDEAAKKIID 91

Query: 328 SL 323
            L
Sbjct: 92  FL 93


>01_06_1765 + 39735629-39736240
          Length = 203

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 641 PRPSSPALRHDLALLADQLHTCKLMLDEEK 730
           P P  PA R+ +A  A+Q   C LM+D ++
Sbjct: 99  PPPPPPANRNGVAYEAEQRRACALMVDSQE 128


>04_01_0308 + 4188726-4190351
          Length = 541

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 375 EENTPVQLSETDNEKLA-DSEYLQTLIDKIHILKKELISENDK 500
           E+    +  + D EK+  +SEYL+  +++IH  K  + +EN+K
Sbjct: 86  EKEVAAKTFDDDKEKMKMESEYLKRRLEEIHDNKDFMKTENNK 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,818,934
Number of Sequences: 37544
Number of extensions: 310174
Number of successful extensions: 1211
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)