Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1033
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47673| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.73 
SB_20717| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.73 
SB_30869| Best HMM Match : DUF164 (HMM E-Value=0.18)                   29   3.0  
SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_32407| Best HMM Match : WSC (HMM E-Value=0.0008)                    28   6.8  
SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)                   28   6.8  
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)                   28   6.8  
SB_28199| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_25551| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_47673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 458 NTHPEEGIDIGERQAGLPIDVAAVFQIEG 544
           NTHPE    +G+ + G P++V  +F +EG
Sbjct: 621 NTHPELRALVGDVEHGKPLEVVMLFSVEG 649


>SB_20717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 458 NTHPEEGIDIGERQAGLPIDVAAVFQIEG 544
           NTHPE    +G+ + G P++V  +F +EG
Sbjct: 35  NTHPELRALVGDVEHGKPLEVVMLFSVEG 63


>SB_30869| Best HMM Match : DUF164 (HMM E-Value=0.18)
          Length = 442

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/50 (28%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
 Frame = +1

Query: 103 VRLQQKL-ALIEQSHSVAIREEQIKA--KRAEESARKICARQEERVALLE 243
           ++L+ K+ ++ E+ H + I ++ ++A  K AEE  + + A  +ER++ +E
Sbjct: 388 LQLEAKIQSMKERRHEIGIHKDMLRAQLKSAEEERQTVSAELQERISKIE 437


>SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4482

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = +1

Query: 88   TPAQLVRLQQKLALIEQS-HSVAIREEQIKAKRAEESARKICARQEERVALLEGKLANSQ 264
            TP + V LQ +  L + +  S+ ++EE+ ++ RAE S  ++    ++R   L+  L + Q
Sbjct: 3191 TPEEQVELQFEAYLTKLAVKSLKMKEEECRSLRAEHSITRVIELLQQRSRDLDVPLYDLQ 3250

Query: 265  RL*DS 279
             + DS
Sbjct: 3251 TMWDS 3255


>SB_32407| Best HMM Match : WSC (HMM E-Value=0.0008)
          Length = 832

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
 Frame = +1

Query: 103 VRLQQKLALIEQSHSVAIREEQIKAKRAEESARKI--CARQEERVA 234
           ++ +++ A  ++  ++ IR EQ+K KR  E ARKI    RQ+ R+A
Sbjct: 370 LKRERQRAGAKRRAAIRIRMEQLKRKRELEHARKIEFLRRQKLRIA 415


>SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)
          Length = 1223

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +1

Query: 94  AQLVRLQQKLALIEQSHSVAIREEQIKAKRAEESARKICARQEERVALLEGK 249
           +QL  LQ++LA   +S    +RE++ + +  ++      A+Q E+  LLE K
Sbjct: 180 SQLESLQRELAEKHESQLNELREQRARLEELQQQLSAEQAKQREQQLLLEEK 231


>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
          Length = 1249

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +1

Query: 160 EEQIKAKRAEESARKICARQEERVALLEGK 249
           EEQ + K  EE A K  A  EER+  LE K
Sbjct: 322 EEQARRKAEEERAAKAKAEMEERMRKLEEK 351


>SB_28199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 538 DLEHGGDVYGEPCLSFSDIN 479
           D+  GGDVYGE CL  ++ N
Sbjct: 7   DVGDGGDVYGEHCLGDNNYN 26


>SB_25551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 538 DLEHGGDVYGEPCLSFSDIN 479
           D+  GGDVYGE CL  ++ N
Sbjct: 7   DVGDGGDVYGEHCLGDNNYN 26


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,976,935
Number of Sequences: 59808
Number of extensions: 308541
Number of successful extensions: 1032
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)