Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1033
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81099-1|CAB03187.1|  600|Caenorhabditis elegans Hypothetical pr...    31   0.64 
Z48583-2|CAA88471.2|  595|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z81099-1|CAB03187.1|  600|Caenorhabditis elegans Hypothetical
           protein K08F9.2 protein.
          Length = 600

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = -1

Query: 535 LEHGGDVYGEPCLSFSDINSFFRMCILSINVCRYSLSANFSLSVSLSWTGVFSSIVAGA 359
           +EH  ++     +SFSD   +  +  L+  V  YS+S +FS++   SWT   S ++  A
Sbjct: 477 IEHSAEI---TAVSFSDDGEYLAVTDLARKVIPYSVSTDFSVTSPNSWTFHTSKVLTVA 532


>Z48583-2|CAA88471.2|  595|Caenorhabditis elegans Hypothetical
           protein F54B3.3 protein.
          Length = 595

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 133 EQSHSVAIREEQIKAKRAEESARKICARQEERVALLEGKLANSQRL*DSTI 285
           + +HS A  ++Q+  KRAEE        QEE +   E  +   ++L   TI
Sbjct: 121 KHAHSRAEYQDQLARKRAEEELAMKARMQEESLRKQEESVKKQEQLRKQTI 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,242,135
Number of Sequences: 27780
Number of extensions: 234232
Number of successful extensions: 911
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)