Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1033
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    27   0.24 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.74 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.2  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   9.1  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    21   9.1  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    21   9.1  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   9.1  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +1

Query: 148 VAIREEQIKAKRAEESARKI 207
           +A+ +EQ+K+K+ EES RK+
Sbjct: 365 LALDQEQLKSKKLEESMRKL 384


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 455 QNTHPEEGIDIGERQAGLPIDVAAV 529
           Q  HPE  ID+  R++ L  DV  V
Sbjct: 367 QTVHPETIIDVSRRRSSLICDVYGV 391


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 206 IFLADSSALFAFICSSLIATECDCSISANF 117
           + +  S +L  F+C   IA +  CS S+ F
Sbjct: 246 VLVNGSWSLPGFVCDFYIAMDVTCSTSSIF 275


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 90  SLNSPGFGTLQPPLGCLQGTAQISNSLL 7
           SLNS  FG  +  L   QG     NS++
Sbjct: 45  SLNSENFGIFKRALMGFQGVRGKKNSII 72


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 90  SLNSPGFGTLQPPLGCLQGTAQISNSLL 7
           SLNS  FG  +  L   QG     NS++
Sbjct: 46  SLNSENFGIFKRALMGFQGVRGKKNSII 73


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 90  SLNSPGFGTLQPPLGCLQGTAQISNSLL 7
           SLNS  FG  +  L   QG     NS++
Sbjct: 45  SLNSENFGIFKRALMGFQGVRGKKNSII 72


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 90  SLNSPGFGTLQPPLGCLQGTAQISNSLL 7
           SLNS  FG  +  L   QG     NS++
Sbjct: 45  SLNSENFGIFKRALMGFQGVRGKKNSII 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,172
Number of Sequences: 438
Number of extensions: 2564
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)