BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1033 (736 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g73700.1 68414.m08534 MATE efflux family protein similar to r... 31 0.79 At5g52450.1 68418.m06508 MATE efflux protein-related strong simi... 29 2.4 At5g57000.1 68418.m07114 expressed protein similar to unknown pr... 29 3.2 At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 29 4.2 At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 29 4.2 At3g27785.1 68416.m03466 myb family transcription factor (MYB118... 27 9.8 At2g34360.1 68415.m04207 MATE efflux family protein similar to r... 27 9.8 At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 27 9.8 At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 27 9.8 >At1g73700.1 68414.m08534 MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile: PF01554 uncharacterized membrane protein family Length = 476 Score = 31.1 bits (67), Expect = 0.79 Identities = 18/54 (33%), Positives = 22/54 (40%) Frame = -1 Query: 448 NVCRYSLSANFSLSVSLSWTGVFSSIVAGAIFSSSLPFIESLSCCISCWSRRLL 287 NV S FS S S SWTG S + F ++ C+ WS LL Sbjct: 217 NVILLSCYVKFSPSCSHSWTGFSKEAFQELYDFSKIAFPSAVMVCLELWSFELL 270 >At5g52450.1 68418.m06508 MATE efflux protein-related strong similarity to unknown protein (pir||T02324); contains Pfam profile PF01554 Uncharacterized membrane protein family Length = 486 Score = 29.5 bits (63), Expect = 2.4 Identities = 17/55 (30%), Positives = 23/55 (41%) Frame = -1 Query: 451 INVCRYSLSANFSLSVSLSWTGVFSSIVAGAIFSSSLPFIESLSCCISCWSRRLL 287 +NV FS S SL+WTG + + L +L C+ WS LL Sbjct: 218 LNVVLLFCYVKFSPSCSLTWTGFSKEALRDILPFLRLAVPSALMVCLEMWSFELL 272 >At5g57000.1 68418.m07114 expressed protein similar to unknown protein (gb|AAF21159.1) Length = 187 Score = 29.1 bits (62), Expect = 3.2 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +3 Query: 372 IEENTPVQLSETDNEKLADSEYLQTLIDKIHILKKE 479 I ENTPV + N E ++ +ID IH KKE Sbjct: 109 ISENTPVDEVKAPNVLERAKEEIEAVIDTIHSKKKE 144 >At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10 WD-40 repeats (PF00400) (1 weak) Length = 1131 Score = 28.7 bits (61), Expect = 4.2 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +3 Query: 591 VWSWRRSEHVAPGRASNRDPPRQ 659 +W W+R+E A G+A+ PP+Q Sbjct: 794 LWKWQRNERNATGKATASLPPQQ 816 >At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10 WD-40 repeats (PF00400) (1 weak) Length = 1131 Score = 28.7 bits (61), Expect = 4.2 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +3 Query: 591 VWSWRRSEHVAPGRASNRDPPRQ 659 +W W+R+E A G+A+ PP+Q Sbjct: 794 LWKWQRNERNATGKATASLPPQQ 816 >At3g27785.1 68416.m03466 myb family transcription factor (MYB118) contains PFAM profile: PF00249 myb-like DNA binding domain Length = 437 Score = 27.5 bits (58), Expect = 9.8 Identities = 12/38 (31%), Positives = 24/38 (63%) Frame = +1 Query: 136 QSHSVAIREEQIKAKRAEESARKICARQEERVALLEGK 249 Q++ V I+ EQIK K R+IC + ++ ++++G+ Sbjct: 155 QNNQVMIKTEQIKKKNKRFQMRRIC-KPTKKASIIKGQ 191 >At2g34360.1 68415.m04207 MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family Length = 466 Score = 27.5 bits (58), Expect = 9.8 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Frame = -1 Query: 451 INVCRYSLSANFSLSVSLSWTGVFSSIVAGAIFSSSLPFIES--LSCCISCWSRRLL 287 +NV S FS S SL+WTG FS I I S + C + WS LL Sbjct: 219 LNVILLSCYVKFSPSCSLTWTG-FSKEARRDIIPFMKLVIPSAFMVCSLEMWSFELL 274 >At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 WD-40 repeats domain (PF00400) (6 weak) Length = 1120 Score = 27.5 bits (58), Expect = 9.8 Identities = 9/23 (39%), Positives = 16/23 (69%) Frame = +3 Query: 591 VWSWRRSEHVAPGRASNRDPPRQ 659 +W W+R++ A G+A+ PP+Q Sbjct: 783 LWKWQRNDRNATGKATASLPPQQ 805 >At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 WD-40 repeats domain (PF00400) (6 weak) Length = 1120 Score = 27.5 bits (58), Expect = 9.8 Identities = 9/23 (39%), Positives = 16/23 (69%) Frame = +3 Query: 591 VWSWRRSEHVAPGRASNRDPPRQ 659 +W W+R++ A G+A+ PP+Q Sbjct: 783 LWKWQRNDRNATGKATASLPPQQ 805 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,763,364 Number of Sequences: 28952 Number of extensions: 225215 Number of successful extensions: 803 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 731 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 803 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1614253080 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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