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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1033
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73700.1 68414.m08534 MATE efflux family protein similar to r...    31   0.79 
At5g52450.1 68418.m06508 MATE efflux protein-related strong simi...    29   2.4  
At5g57000.1 68418.m07114 expressed protein similar to unknown pr...    29   3.2  
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10...    29   4.2  
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10...    29   4.2  
At3g27785.1 68416.m03466 myb family transcription factor (MYB118...    27   9.8  
At2g34360.1 68415.m04207 MATE efflux family protein similar to r...    27   9.8  
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ...    27   9.8  
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ...    27   9.8  

>At1g73700.1 68414.m08534 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile: PF01554
           uncharacterized membrane protein family
          Length = 476

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = -1

Query: 448 NVCRYSLSANFSLSVSLSWTGVFSSIVAGAIFSSSLPFIESLSCCISCWSRRLL 287
           NV   S    FS S S SWTG            S + F  ++  C+  WS  LL
Sbjct: 217 NVILLSCYVKFSPSCSHSWTGFSKEAFQELYDFSKIAFPSAVMVCLELWSFELL 270


>At5g52450.1 68418.m06508 MATE efflux protein-related strong
           similarity to unknown protein (pir||T02324); contains
           Pfam profile PF01554 Uncharacterized membrane protein
           family
          Length = 486

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = -1

Query: 451 INVCRYSLSANFSLSVSLSWTGVFSSIVAGAIFSSSLPFIESLSCCISCWSRRLL 287
           +NV        FS S SL+WTG     +   +    L    +L  C+  WS  LL
Sbjct: 218 LNVVLLFCYVKFSPSCSLTWTGFSKEALRDILPFLRLAVPSALMVCLEMWSFELL 272


>At5g57000.1 68418.m07114 expressed protein similar to unknown
           protein (gb|AAF21159.1)
          Length = 187

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 372 IEENTPVQLSETDNEKLADSEYLQTLIDKIHILKKE 479
           I ENTPV   +  N      E ++ +ID IH  KKE
Sbjct: 109 ISENTPVDEVKAPNVLERAKEEIEAVIDTIHSKKKE 144


>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
           WD-40 repeats (PF00400) (1 weak)
          Length = 1131

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 591 VWSWRRSEHVAPGRASNRDPPRQ 659
           +W W+R+E  A G+A+   PP+Q
Sbjct: 794 LWKWQRNERNATGKATASLPPQQ 816


>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
           WD-40 repeats (PF00400) (1 weak)
          Length = 1131

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 591 VWSWRRSEHVAPGRASNRDPPRQ 659
           +W W+R+E  A G+A+   PP+Q
Sbjct: 794 LWKWQRNERNATGKATASLPPQQ 816


>At3g27785.1 68416.m03466 myb family transcription factor (MYB118)
           contains PFAM profile: PF00249 myb-like DNA binding
           domain
          Length = 437

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +1

Query: 136 QSHSVAIREEQIKAKRAEESARKICARQEERVALLEGK 249
           Q++ V I+ EQIK K      R+IC +  ++ ++++G+
Sbjct: 155 QNNQVMIKTEQIKKKNKRFQMRRIC-KPTKKASIIKGQ 191


>At2g34360.1 68415.m04207 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 466

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -1

Query: 451 INVCRYSLSANFSLSVSLSWTGVFSSIVAGAIFSSSLPFIES--LSCCISCWSRRLL 287
           +NV   S    FS S SL+WTG FS      I       I S  + C +  WS  LL
Sbjct: 219 LNVILLSCYVKFSPSCSLTWTG-FSKEARRDIIPFMKLVIPSAFMVCSLEMWSFELL 274


>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
           WD-40 repeats domain (PF00400) (6 weak)
          Length = 1120

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 591 VWSWRRSEHVAPGRASNRDPPRQ 659
           +W W+R++  A G+A+   PP+Q
Sbjct: 783 LWKWQRNDRNATGKATASLPPQQ 805


>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
           WD-40 repeats domain (PF00400) (6 weak)
          Length = 1120

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 591 VWSWRRSEHVAPGRASNRDPPRQ 659
           +W W+R++  A G+A+   PP+Q
Sbjct: 783 LWKWQRNDRNATGKATASLPPQQ 805


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,763,364
Number of Sequences: 28952
Number of extensions: 225215
Number of successful extensions: 803
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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