Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1033
(736 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g73700.1 68414.m08534 MATE efflux family protein similar to r... 31 0.79
At5g52450.1 68418.m06508 MATE efflux protein-related strong simi... 29 2.4
At5g57000.1 68418.m07114 expressed protein similar to unknown pr... 29 3.2
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 29 4.2
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 29 4.2
At3g27785.1 68416.m03466 myb family transcription factor (MYB118... 27 9.8
At2g34360.1 68415.m04207 MATE efflux family protein similar to r... 27 9.8
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 27 9.8
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 27 9.8
>At1g73700.1 68414.m08534 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 31.1 bits (67), Expect = 0.79
Identities = 18/54 (33%), Positives = 22/54 (40%)
Frame = -1
Query: 448 NVCRYSLSANFSLSVSLSWTGVFSSIVAGAIFSSSLPFIESLSCCISCWSRRLL 287
NV S FS S S SWTG S + F ++ C+ WS LL
Sbjct: 217 NVILLSCYVKFSPSCSHSWTGFSKEAFQELYDFSKIAFPSAVMVCLELWSFELL 270
>At5g52450.1 68418.m06508 MATE efflux protein-related strong
similarity to unknown protein (pir||T02324); contains
Pfam profile PF01554 Uncharacterized membrane protein
family
Length = 486
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = -1
Query: 451 INVCRYSLSANFSLSVSLSWTGVFSSIVAGAIFSSSLPFIESLSCCISCWSRRLL 287
+NV FS S SL+WTG + + L +L C+ WS LL
Sbjct: 218 LNVVLLFCYVKFSPSCSLTWTGFSKEALRDILPFLRLAVPSALMVCLEMWSFELL 272
>At5g57000.1 68418.m07114 expressed protein similar to unknown
protein (gb|AAF21159.1)
Length = 187
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 372 IEENTPVQLSETDNEKLADSEYLQTLIDKIHILKKE 479
I ENTPV + N E ++ +ID IH KKE
Sbjct: 109 ISENTPVDEVKAPNVLERAKEEIEAVIDTIHSKKKE 144
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 591 VWSWRRSEHVAPGRASNRDPPRQ 659
+W W+R+E A G+A+ PP+Q
Sbjct: 794 LWKWQRNERNATGKATASLPPQQ 816
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 591 VWSWRRSEHVAPGRASNRDPPRQ 659
+W W+R+E A G+A+ PP+Q
Sbjct: 794 LWKWQRNERNATGKATASLPPQQ 816
>At3g27785.1 68416.m03466 myb family transcription factor (MYB118)
contains PFAM profile: PF00249 myb-like DNA binding
domain
Length = 437
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +1
Query: 136 QSHSVAIREEQIKAKRAEESARKICARQEERVALLEGK 249
Q++ V I+ EQIK K R+IC + ++ ++++G+
Sbjct: 155 QNNQVMIKTEQIKKKNKRFQMRRIC-KPTKKASIIKGQ 191
>At2g34360.1 68415.m04207 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
Uncharacterized membrane protein family
Length = 466
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = -1
Query: 451 INVCRYSLSANFSLSVSLSWTGVFSSIVAGAIFSSSLPFIES--LSCCISCWSRRLL 287
+NV S FS S SL+WTG FS I I S + C + WS LL
Sbjct: 219 LNVILLSCYVKFSPSCSLTWTG-FSKEARRDIIPFMKLVIPSAFMVCSLEMWSFELL 274
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 591 VWSWRRSEHVAPGRASNRDPPRQ 659
+W W+R++ A G+A+ PP+Q
Sbjct: 783 LWKWQRNDRNATGKATASLPPQQ 805
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 591 VWSWRRSEHVAPGRASNRDPPRQ 659
+W W+R++ A G+A+ PP+Q
Sbjct: 783 LWKWQRNDRNATGKATASLPPQQ 805
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,763,364
Number of Sequences: 28952
Number of extensions: 225215
Number of successful extensions: 803
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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