Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1032
         (609 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    24   0.87 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    24   0.87 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    24   0.87 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    24   0.87 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    24   0.87 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    24   0.87 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           24   0.87 
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    24   0.87 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    24   0.87 
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   8.1  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.87
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 172 NSSYTRSLCISSPIAAGASPP 110
           NS+ T+S  ++SP++   SPP
Sbjct: 134 NSNATKSSGLTSPLSVSTSPP 154


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.87
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 172 NSSYTRSLCISSPIAAGASPP 110
           NS+ T+S  ++SP++   SPP
Sbjct: 134 NSNATKSSGLTSPLSVSTSPP 154


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 24.2 bits (50), Expect = 0.87
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 172 NSSYTRSLCISSPIAAGASPP 110
           NS+ T+S  ++SP++   SPP
Sbjct: 134 NSNATKSSGLTSPLSVSTSPP 154


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.87
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 172 NSSYTRSLCISSPIAAGASPP 110
           NS+ T+S  ++SP++   SPP
Sbjct: 134 NSNATKSSGLTSPLSVSTSPP 154


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 24.2 bits (50), Expect = 0.87
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 172 NSSYTRSLCISSPIAAGASPP 110
           NS+ T+S  ++SP++   SPP
Sbjct: 134 NSNATKSSGLTSPLSVSTSPP 154


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 24.2 bits (50), Expect = 0.87
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 172 NSSYTRSLCISSPIAAGASPP 110
           NS+ T+S  ++SP++   SPP
Sbjct: 90  NSNATKSSGLTSPLSVSTSPP 110


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.87
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 172 NSSYTRSLCISSPIAAGASPP 110
           NS+ T+S  ++SP++   SPP
Sbjct: 134 NSNATKSSGLTSPLSVSTSPP 154


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 24.2 bits (50), Expect = 0.87
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 172 NSSYTRSLCISSPIAAGASPP 110
           NS+ T+S  ++SP++   SPP
Sbjct: 134 NSNATKSSGLTSPLSVSTSPP 154


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.87
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 172 NSSYTRSLCISSPIAAGASPP 110
           NS+ T+S  ++SP++   SPP
Sbjct: 134 NSNATKSSGLTSPLSVSTSPP 154


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 221 FLKEPQLKKFARYWFIQQFIHTFSLYIKP 135
           FLK   L+K       ++ I  FS YIKP
Sbjct: 229 FLKLYPLRKATAKIAAKRLIEDFSGYIKP 257


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,626
Number of Sequences: 336
Number of extensions: 2289
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)