Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1032
         (609 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071506-1|AAL49128.1|  460|Drosophila melanogaster RE56061p pro...    30   2.8  
AE014297-3027|AAF55909.2|  460|Drosophila melanogaster CG31176-P...    30   2.8  
BT029152-1|ABJ17087.1|  372|Drosophila melanogaster RT01156p pro...    28   8.7  
AE014297-3714|AAF56396.1|  372|Drosophila melanogaster CG11921-P...    28   8.7  

>AY071506-1|AAL49128.1|  460|Drosophila melanogaster RE56061p
           protein.
          Length = 460

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 40  TITYNAMRALHIGPGRTGARCHRVGA 117
           T  Y   R LH+ P RTG R H V A
Sbjct: 173 TANYRRGRRLHVNPPRTGIRSHSVDA 198


>AE014297-3027|AAF55909.2|  460|Drosophila melanogaster CG31176-PA
           protein.
          Length = 460

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 40  TITYNAMRALHIGPGRTGARCHRVGA 117
           T  Y   R LH+ P RTG R H V A
Sbjct: 173 TANYRRGRRLHVNPPRTGIRSHSVDA 198


>BT029152-1|ABJ17087.1|  372|Drosophila melanogaster RT01156p
           protein.
          Length = 372

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -3

Query: 193 LHATGSYNSSYTRSLCISSPIAAGASPPRGDTALRYDRGRYVMPSSRYR 47
           L A+G  NS  T  L IS P+   A+P      + Y+    V P+ +YR
Sbjct: 309 LPASGIPNSPTTYELAISHPLFMMAAPIANMHNIYYNNVTLVAPAQQYR 357


>AE014297-3714|AAF56396.1|  372|Drosophila melanogaster CG11921-PA
           protein.
          Length = 372

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -3

Query: 193 LHATGSYNSSYTRSLCISSPIAAGASPPRGDTALRYDRGRYVMPSSRYR 47
           L A+G  NS  T  L IS P+   A+P      + Y+    V P+ +YR
Sbjct: 309 LPASGIPNSPTTYELAISHPLFMMAAPIANMHNIYYNNVTLVAPAQQYR 357


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,773,852
Number of Sequences: 53049
Number of extensions: 435030
Number of successful extensions: 908
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2503659279
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)