Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1032
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   4.1  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   5.4  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   5.4  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   5.4  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   5.4  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   5.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   7.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   7.1  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   9.4  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +1

Query: 160 CMNCCMNQ*RANFFNCGSFRKRKSLITPLEGRV 258
           C N CMN      FN     K  +  T +E RV
Sbjct: 306 CTNSCMNPIVYGAFNIRDRNKTSARPTTIETRV 338


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 175 YNSSYTRSLCISSPIAAGASPPR 107
           YN +Y   + +  P+  G  PPR
Sbjct: 104 YNINYIEQIPVPVPVYYGNFPPR 126


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 175 YNSSYTRSLCISSPIAAGASPPR 107
           YN +Y   + +  P+  G  PPR
Sbjct: 104 YNINYIEQIPVPVPVYYGNFPPR 126


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 175 YNSSYTRSLCISSPIAAGASPPR 107
           YN +Y   + +  P+  G  PPR
Sbjct: 104 YNINYIEQIPVPVPVYYGNFPPR 126


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 175 YNSSYTRSLCISSPIAAGASPPR 107
           YN +Y   + +  P+  G  PPR
Sbjct: 104 YNINYIEQIPVPVPVYYGNFPPR 126


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 175 YNSSYTRSLCISSPIAAGASPPR 107
           YN +Y   + +  P+  G  PPR
Sbjct: 104 YNINYIEQIPVPVPVYYGNFPPR 126


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 196 FFNCGSFRKRKSLITPLEGRVYYEL 270
           ++  G F  R ++ TPL     YE+
Sbjct: 84  WYKQGMFLSRNAIFTPLNSEQKYEV 108


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 196 FFNCGSFRKRKSLITPLEGRVYYEL 270
           ++  G F  R ++ TPL     YE+
Sbjct: 84  WYKQGMFLSRNAIFTPLNSEQKYEV 108


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 390 NFSDRVILVIDKDILN 437
           NF DRV + + ++I+N
Sbjct: 32  NFEDRVTMYVYEEIIN 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,775
Number of Sequences: 438
Number of extensions: 2864
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)