Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1031
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom...    25   5.5  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    25   5.5  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   5.5  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    24   9.7  

>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 191 TNLFLTPLLRHTLVNLL 241
           TN+F+T +LRH+ +N L
Sbjct: 105 TNMFVTDMLRHSHLNYL 121


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 115 TIISEAIEPRDELY*GXHLACRHRVISRVLSWPHLVPN 2
           T+ S   +   EL+   H     R+ +R+ S PH  PN
Sbjct: 313 TLASAPFDDFIELFVAVHSGFTERLANRLYSMPHEYPN 350


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = -1

Query: 352 MYFXHG---YQV*SQSXARFSSYNGRNIRKNH 266
           ++F HG   Y++ S+   +  S N RN+ K H
Sbjct: 418 LFFFHGVKLYKISSRILTKLYSPNSRNVTKKH 449


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 189 CNLASQ*EWHTEXLNN*TSPFRCTIRSLVKL*SLAMNCI 73
           C++    EW  +   N T P R   +  + L +LA NC+
Sbjct: 157 CDILFSSEWPEDVQENSTLPERKLPKGCMPLAALAANCM 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,271,052
Number of Sequences: 5004
Number of extensions: 18411
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)