Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1031
         (394 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800     27   7.1  
12_01_0403 - 3185897-3186931,3187200-3187311,3187425-3187735,318...    26   9.4  

>09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800
          Length = 863

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -2

Query: 198 RFVCN--LASQ*EWHTEXLNN*TSPFRCTIRSLVKL*SLAMNCIK 70
           RFV +  + S  +W T   ++   P  C +R ++    L +NC K
Sbjct: 29  RFVTSPSITSNPDWDTSNADDSVGPASCCVRKIIVSNFLPLNCTK 73


>12_01_0403 -
           3185897-3186931,3187200-3187311,3187425-3187735,
           3188112-3188324,3188834-3189052
          Length = 629

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +2

Query: 38  NHAMPTCQVXALIQFIARLYSFT--NDRIVQRNGLV 139
           NH   T  +  LIQ+I R++     N +IV+ +G+V
Sbjct: 89  NHTNNTLSMIVLIQYIPRVFLIVSLNSKIVKSSGVV 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,834,550
Number of Sequences: 37544
Number of extensions: 109246
Number of successful extensions: 150
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)