Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1031
         (394 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   2.9  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   6.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   8.8  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +1

Query: 190 NKSVLNTTVKAHS 228
           NKS+LN+ +K+HS
Sbjct: 28  NKSMLNSHLKSHS 40


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 176 LAKLQTNLFLTPLLRHTL 229
           L+ +  NL+ +PLL H L
Sbjct: 261 LSPVTNNLYYSPLLSHGL 278


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 59  QVXALIQFIARLYSFTNDRIVQRN 130
           QV ++I+F   L SFT   I  +N
Sbjct: 203 QVESVIEFEPGLDSFTQQLIEMKN 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,742
Number of Sequences: 438
Number of extensions: 1296
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)