Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1030
(393 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9UK45 Cluster: U6 snRNA-associated Sm-like protein LSm... 124 8e-28
UniRef50_A7QWV4 Cluster: Chromosome chr13 scaffold_210, whole ge... 99 3e-20
UniRef50_UPI0000D9E97B Cluster: PREDICTED: LSM7 homolog, U6 smal... 97 1e-19
UniRef50_A4S1J9 Cluster: Predicted protein; n=2; Ostreococcus|Re... 90 2e-17
UniRef50_O74499 Cluster: U6 snRNP-associated protein Lsm7; n=19;... 82 4e-15
UniRef50_A6QY75 Cluster: Predicted protein; n=2; Fungi/Metazoa g... 81 6e-15
UniRef50_A7TGG5 Cluster: Putative uncharacterized protein; n=1; ... 81 7e-15
UniRef50_Q4MYV9 Cluster: U6 snRNA-associated protein, putative; ... 81 1e-14
UniRef50_O75243 Cluster: R30783_1; n=3; Mammalia|Rep: R30783_1 -... 77 2e-13
UniRef50_Q6MY59 Cluster: U6 snrna-associated sm-like protein, pu... 77 2e-13
UniRef50_Q5K900 Cluster: U6 snRNA binding protein, putative; n=1... 77 2e-13
UniRef50_Q4Z0C4 Cluster: U6 snRNA-associated Sm-like protein, pu... 76 3e-13
UniRef50_P53905 Cluster: U6 snRNA-associated Sm-like protein LSm... 74 9e-13
UniRef50_Q7SDP3 Cluster: Putative uncharacterized protein NCU019... 73 1e-12
UniRef50_Q6BPZ2 Cluster: Debaryomyces hansenii chromosome E of s... 64 9e-10
UniRef50_Q5CY65 Cluster: Putative uncharacterized protein; n=1; ... 57 1e-07
UniRef50_Q8IB57 Cluster: Small nuclear ribonucleoprotein, putati... 52 3e-06
UniRef50_Q9VXE0 Cluster: Probable small nuclear ribonucleoprotei... 52 4e-06
UniRef50_Q9N4G9 Cluster: Probable small nuclear ribonucleoprotei... 51 9e-06
UniRef50_P62308 Cluster: Small nuclear ribonucleoprotein G; n=46... 48 5e-05
UniRef50_Q6CFJ1 Cluster: Similar to sp|O95777 Homo sapiens U6 sn... 48 8e-05
UniRef50_Q54RX0 Cluster: LSM (Like-Sm) domain-containing protein... 46 3e-04
UniRef50_A0D2M7 Cluster: Chromosome undetermined scaffold_35, wh... 46 3e-04
UniRef50_Q00XA2 Cluster: Putative small nuclear ribonucleoprotei... 45 5e-04
UniRef50_O74966 Cluster: Probable small nuclear ribonucleoprotei... 45 5e-04
UniRef50_Q4PED8 Cluster: Putative uncharacterized protein; n=1; ... 44 8e-04
UniRef50_UPI000049841B Cluster: small nuclear ribonucleoprotein ... 44 0.001
UniRef50_Q4Q9J1 Cluster: Lsm7p protein, putative; n=6; Trypanoso... 43 0.002
UniRef50_Q4MZU2 Cluster: U6 snRNA-associated Sm-like protein LSm... 43 0.002
UniRef50_Q6CRN4 Cluster: Similar to sp|P40204 Saccharomyces cere... 43 0.002
UniRef50_A2R8P2 Cluster: Function: snRPG of H. sapiens is associ... 42 0.006
UniRef50_Q8SRW7 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN G; n=1;... 41 0.007
UniRef50_P57670 Cluster: Putative snRNP Sm-like protein; n=4; Th... 40 0.023
UniRef50_UPI0000D55DF4 Cluster: PREDICTED: similar to CG31950-PA... 39 0.030
UniRef50_Q4UC24 Cluster: U6 snRNA-associated Sm-like potein, put... 38 0.069
UniRef50_Q4Q5H5 Cluster: Small nuclear ribonucleoprotein, putati... 38 0.069
UniRef50_Q2FT45 Cluster: Like-Sm ribonucleoprotein, core; n=3; M... 38 0.069
UniRef50_P40089 Cluster: U6 snRNA-associated Sm-like protein LSm... 38 0.091
UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core, ... 37 0.12
UniRef50_A0D0Y9 Cluster: Chromosome undetermined scaffold_33, wh... 37 0.12
UniRef50_O95777 Cluster: U6 snRNA-associated Sm-like protein LSm... 37 0.16
UniRef50_Q2URY1 Cluster: Predicted protein; n=1; Aspergillus ory... 36 0.21
UniRef50_UPI0000499B3D Cluster: hypothetical protein 7.t00009; n... 36 0.28
UniRef50_Q4N4E0 Cluster: Small nuclear ribonucleoprotein G, puta... 36 0.28
UniRef50_Q0WMZ9 Cluster: Sm-like protein; n=19; Eukaryota|Rep: S... 36 0.37
UniRef50_Q6BPZ1 Cluster: Debaryomyces hansenii chromosome E of s... 36 0.37
UniRef50_Q677D4 Cluster: Small nuclear ribonucleoprotein polypep... 35 0.64
UniRef50_Q7QZM9 Cluster: GLP_680_47464_47838; n=1; Giardia lambl... 35 0.64
UniRef50_Q8ZYP8 Cluster: Small nuclear ribonucleoprotein homolog... 35 0.64
UniRef50_Q9Y7M4 Cluster: Probable U6 snRNA-associated Sm-like pr... 35 0.64
UniRef50_Q6QA14 Cluster: Lsm8p; n=6; Trypanosomatidae|Rep: Lsm8p... 34 0.85
UniRef50_A3DMZ9 Cluster: Like-Sm ribonucleoprotein, core; n=1; S... 34 0.85
UniRef50_O29386 Cluster: Putative snRNP Sm-like protein; n=10; A... 34 0.85
UniRef50_UPI00015BD351 Cluster: UPI00015BD351 related cluster; n... 34 1.1
UniRef50_A7PDU1 Cluster: Chromosome chr11 scaffold_13, whole gen... 34 1.1
UniRef50_A2E014 Cluster: Sm protein; n=2; Trichomonas vaginalis ... 34 1.1
UniRef50_Q4JAL0 Cluster: Sm-like protein; n=3; Sulfolobaceae|Rep... 34 1.1
UniRef50_Q3LW01 Cluster: MRNA splicing factor; n=1; Bigelowiella... 33 1.5
UniRef50_Q54F39 Cluster: Putative uncharacterized protein; n=1; ... 33 1.5
UniRef50_Q7S1Q3 Cluster: Putative uncharacterized protein NCU095... 33 1.5
UniRef50_Q6CGS0 Cluster: Similar to sp|P47017 Saccharomyces cere... 33 1.5
UniRef50_Q6BR90 Cluster: Similar to CA5853|CaLSM6 Candida albica... 33 1.5
UniRef50_Q4N5C8 Cluster: Small nuclear ribonucleoprotein B, puta... 33 2.0
UniRef50_Q72NN3 Cluster: Putative uncharacterized protein; n=1; ... 33 2.6
UniRef50_A2DPP4 Cluster: Phosphatidylinositol 3-and 4-kinase fam... 33 2.6
UniRef50_Q9HPS2 Cluster: SnRNP homolog; n=2; Halobacteriaceae|Re... 33 2.6
UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4; Eu... 33 2.6
UniRef50_Q9Y4Y9 Cluster: U6 snRNA-associated Sm-like protein LSm... 33 2.6
UniRef50_Q40942 Cluster: Small nucleolar ribonucleoprotein E hom... 32 3.4
UniRef50_Q59ZT4 Cluster: Potential RNA processing complex subuni... 32 3.4
UniRef50_Q701X8 Cluster: Putative uncharacterized protein; n=1; ... 32 3.4
UniRef50_O74483 Cluster: U6 snRNA-associated Sm-like protein LSm... 32 3.4
UniRef50_Q8IL38 Cluster: Small nuclear ribonuclear protein, puta... 32 4.5
UniRef50_Q5CME6 Cluster: Similar to small nuclear ribonucleoprot... 32 4.5
UniRef50_Q4WP21 Cluster: Small nuclear ribonucleoprotein SmB, pu... 32 4.5
UniRef50_Q4PA95 Cluster: Putative uncharacterized protein; n=1; ... 32 4.5
UniRef50_Q2H3V8 Cluster: Predicted protein; n=1; Chaetomium glob... 32 4.5
UniRef50_Q0UCR7 Cluster: Putative uncharacterized protein; n=1; ... 32 4.5
UniRef50_A3H6D3 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 32 4.5
UniRef50_Q01T38 Cluster: Putative uncharacterized protein; n=1; ... 31 6.0
UniRef50_Q8ILU8 Cluster: Ribonucleoprotein, putative; n=2; Plasm... 31 6.0
UniRef50_Q8IB34 Cluster: Ribonucleoprotein, putative; n=1; Plasm... 31 6.0
UniRef50_Q4YVP4 Cluster: Ribonucleoprotein, putative; n=3; Plasm... 31 6.0
UniRef50_Q4N728 Cluster: U6 small nuclear ribonucleoprotein, put... 31 6.0
UniRef50_A2GMH6 Cluster: Sm protein; n=3; Trichomonas vaginalis ... 31 6.0
UniRef50_Q6BK43 Cluster: Similar to sp|P40089 Saccharomyces cere... 31 6.0
UniRef50_Q0UX37 Cluster: Predicted protein; n=1; Phaeosphaeria n... 31 6.0
UniRef50_A3LX11 Cluster: Predicted protein; n=3; Saccharomycetac... 31 6.0
UniRef50_Q8WZ42 Cluster: Titin; n=65; Eukaryota|Rep: Titin - Hom... 31 6.0
UniRef50_Q8RI91 Cluster: Putative uncharacterized protein FN1720... 31 7.9
UniRef50_Q73NK7 Cluster: Putative uncharacterized protein; n=1; ... 31 7.9
UniRef50_Q4ABY8 Cluster: 117M18_32; n=1; Brassica rapa|Rep: 117M... 31 7.9
UniRef50_Q5CLJ8 Cluster: U6 snRNA-associated sm-like protein; n=... 31 7.9
UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1; Ae... 31 7.9
UniRef50_Q9UUI1 Cluster: U6 snRNA-associated Sm-like protein LSm... 31 7.9
>UniRef50_Q9UK45 Cluster: U6 snRNA-associated Sm-like protein LSm7;
n=26; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm7 - Homo sapiens (Human)
Length = 103
Score = 124 bits (298), Expect = 8e-28
Identities = 56/73 (76%), Positives = 67/73 (91%)
Frame = +2
Query: 35 NKEKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPY 214
+KEK++KESILDLSKY++K+IRVKF GGREA+GILKG+DPLLNLVLD T E++RDPDD Y
Sbjct: 3 DKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQY 62
Query: 215 KLLDDTRALGLVV 253
KL +DTR LGLVV
Sbjct: 63 KLTEDTRQLGLVV 75
Score = 52.0 bits (119), Expect = 4e-06
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = +1
Query: 256 RGTSVVLICPMDGMEAIPNPFINQE 330
RGTSVVLICP DGMEAIPNPFI Q+
Sbjct: 77 RGTSVVLICPQDGMEAIPNPFIQQQ 101
>UniRef50_A7QWV4 Cluster: Chromosome chr13 scaffold_210, whole
genome shotgun sequence; n=8; Eukaryota|Rep: Chromosome
chr13 scaffold_210, whole genome shotgun sequence -
Vitis vinifera (Grape)
Length = 113
Score = 99.1 bits (236), Expect = 3e-20
Identities = 43/68 (63%), Positives = 53/68 (77%)
Frame = +2
Query: 50 RKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDD 229
RKE++LDL+K+++K ++VK GGR+ G LKGYD LLNLVLD EFLRDPDDP K D
Sbjct: 18 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPQKTTDQ 77
Query: 230 TRALGLVV 253
TR LGL+V
Sbjct: 78 TRRLGLIV 85
Score = 35.9 bits (79), Expect = 0.28
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +1
Query: 256 RGTSVVLICPMDGMEAIPNPFINQEG 333
RGT+V+L+ P DG + I NPFI +G
Sbjct: 87 RGTAVMLVSPTDGTDEIANPFIQPDG 112
>UniRef50_UPI0000D9E97B Cluster: PREDICTED: LSM7 homolog, U6 small
nuclear RNA associated (S. cerevisiae); n=1; Macaca
mulatta|Rep: PREDICTED: LSM7 homolog, U6 small nuclear
RNA associated (S. cerevisiae) - Macaca mulatta
Length = 123
Score = 96.7 bits (230), Expect = 1e-19
Identities = 43/59 (72%), Positives = 54/59 (91%)
Frame = +2
Query: 35 NKEKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDP 211
+KEK++KESILDLSKY++K+IRVKF GGREA+GILKG+DPLLNLVLD T E++RD + P
Sbjct: 3 DKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDLEAP 61
>UniRef50_A4S1J9 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 100
Score = 89.8 bits (213), Expect = 2e-17
Identities = 39/67 (58%), Positives = 53/67 (79%)
Frame = +2
Query: 53 KESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDT 232
KE++LDL++++++ +RVK +GGRE G LKGYD LLNLVLD E LRD +D K+ D+T
Sbjct: 4 KETVLDLARFIDRGVRVKLSGGREVTGTLKGYDQLLNLVLDEAIEHLRDAEDALKISDET 63
Query: 233 RALGLVV 253
RALGL+V
Sbjct: 64 RALGLLV 70
Score = 34.7 bits (76), Expect = 0.64
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +1
Query: 256 RGTSVVLICPMDGMEAIPNPFINQEG 333
RGTSV+++ +D ME I NPF+ ++G
Sbjct: 72 RGTSVMVVSALDSMEEIANPFLAEDG 97
>UniRef50_O74499 Cluster: U6 snRNP-associated protein Lsm7; n=19;
Eukaryota|Rep: U6 snRNP-associated protein Lsm7 -
Schizosaccharomyces pombe (Fission yeast)
Length = 113
Score = 81.8 bits (193), Expect = 4e-15
Identities = 43/84 (51%), Positives = 56/84 (66%)
Frame = +2
Query: 2 EKSKGSQVTGDNKEKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNT 181
+K G + E+ RKESILDLS+Y ++ I+ F GGR+ GILKG+D L+NLVLD+
Sbjct: 5 QKRPGPGNSSQPTERPRKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDV 64
Query: 182 TEFLRDPDDPYKLLDDTRALGLVV 253
E LR+P+D KL R LGLVV
Sbjct: 65 EEQLRNPEDG-KLTGAIRKLGLVV 87
Score = 41.9 bits (94), Expect = 0.004
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +1
Query: 256 RGTSVVLICPMDGMEAIPNPFINQE 330
RGT++VLI PMDG E IPNPF+ E
Sbjct: 89 RGTTLVLIAPMDGSEEIPNPFVQAE 113
>UniRef50_A6QY75 Cluster: Predicted protein; n=2; Fungi/Metazoa
group|Rep: Predicted protein - Ajellomyces capsulatus
NAm1
Length = 171
Score = 81.4 bits (192), Expect = 6e-15
Identities = 40/73 (54%), Positives = 53/73 (72%)
Frame = +2
Query: 38 KEKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYK 217
+EK +KE+ILDL+KY+EK + VKF GGRE G LKGYD L+NLVLD+ E +RD +
Sbjct: 76 QEKPKKENILDLTKYMEKEVCVKFNGGREVTGTLKGYDQLMNLVLDDVREVMRDDEGN-- 133
Query: 218 LLDDTRALGLVVS 256
TR+LGL+V+
Sbjct: 134 --QTTRSLGLIVA 144
Score = 33.5 bits (73), Expect = 1.5
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +1
Query: 256 RGTSVVLICPMDGMEAIPNPFI 321
RGT +VLI P+DG E I NPF+
Sbjct: 145 RGTLLVLISPVDGSEEIANPFL 166
>UniRef50_A7TGG5 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 126
Score = 81.0 bits (191), Expect = 7e-15
Identities = 40/72 (55%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Frame = +2
Query: 41 EKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKL 220
E ++E+I+DL+KY + IRVK GGR G+LKGYDPL+ LVLD T E+LRD +D +
Sbjct: 31 EGPKREAIVDLAKYKDTKIRVKLMGGRLVTGVLKGYDPLMTLVLDETVEYLRDLEDSSII 90
Query: 221 L-DDTRALGLVV 253
L D TR LGL V
Sbjct: 91 LKDQTRDLGLTV 102
>UniRef50_Q4MYV9 Cluster: U6 snRNA-associated protein, putative;
n=2; Theileria|Rep: U6 snRNA-associated protein,
putative - Theileria parva
Length = 104
Score = 80.6 bits (190), Expect = 1e-14
Identities = 36/78 (46%), Positives = 56/78 (71%)
Frame = +2
Query: 23 VTGDNKEKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDP 202
+T +K R +S+++L+K+L K + VKF+GGRE G+L+G+D + NLVLD+T E+L+D
Sbjct: 1 MTAPSKSFRDVKSVINLNKHLNKEVYVKFSGGREVKGVLRGHDAMSNLVLDDTVEYLKDS 60
Query: 203 DDPYKLLDDTRALGLVVS 256
D KL + R LGL+V+
Sbjct: 61 SDSSKLTGEKRNLGLLVA 78
Score = 31.9 bits (69), Expect = 4.5
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 256 RGTSVVLICPMDGMEAIPNPFI 321
RGTSV ++ P++G E I NPF+
Sbjct: 79 RGTSVTVVYPVEGTEKIDNPFL 100
>UniRef50_O75243 Cluster: R30783_1; n=3; Mammalia|Rep: R30783_1 -
Homo sapiens (Human)
Length = 145
Score = 76.6 bits (180), Expect = 2e-13
Identities = 34/46 (73%), Positives = 39/46 (84%)
Frame = +2
Query: 116 GREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGLVV 253
GR +GILKG+DPLLNLVLD T E++RDPDD YKL +DTR LGLVV
Sbjct: 72 GRPRSGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVV 117
Score = 52.0 bits (119), Expect = 4e-06
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = +1
Query: 256 RGTSVVLICPMDGMEAIPNPFINQE 330
RGTSVVLICP DGMEAIPNPFI Q+
Sbjct: 119 RGTSVVLICPQDGMEAIPNPFIQQQ 143
>UniRef50_Q6MY59 Cluster: U6 snrna-associated sm-like protein,
putative (Small nuclear ribonucleoprotein (LSM7),
putative); n=2; Pezizomycotina|Rep: U6 snrna-associated
sm-like protein, putative (Small nuclear
ribonucleoprotein (LSM7), putative) - Aspergillus
fumigatus (Sartorya fumigata)
Length = 134
Score = 76.6 bits (180), Expect = 2e-13
Identities = 33/53 (62%), Positives = 45/53 (84%)
Frame = +2
Query: 38 KEKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLR 196
+EK +KE+ILDLSKY++K ++VKF GGRE +G+LKGYD L+NLVLD+ E +R
Sbjct: 44 QEKPKKENILDLSKYMDKEVKVKFNGGREVSGMLKGYDQLMNLVLDDVKESMR 96
>UniRef50_Q5K900 Cluster: U6 snRNA binding protein, putative; n=1;
Filobasidiella neoformans|Rep: U6 snRNA binding protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 131
Score = 76.6 bits (180), Expect = 2e-13
Identities = 42/83 (50%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Frame = +2
Query: 11 KGSQVTGDNK--EKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTT 184
+G G N+ E++++ESIL+L+++++KSIRVKF GGREA GILKGYD L+NLV+D+
Sbjct: 7 RGGARGGGNQGGERKKRESILNLAQFVDKSIRVKFMGGREATGILKGYDQLMNLVMDDVV 66
Query: 185 EFLRDPDDPYKLLDDTRALGLVV 253
E D TR+LGLVV
Sbjct: 67 EEYEDG-------RPTRSLGLVV 82
>UniRef50_Q4Z0C4 Cluster: U6 snRNA-associated Sm-like protein,
putative; n=4; Plasmodium|Rep: U6 snRNA-associated
Sm-like protein, putative - Plasmodium berghei
Length = 108
Score = 75.8 bits (178), Expect = 3e-13
Identities = 32/63 (50%), Positives = 46/63 (73%)
Frame = +2
Query: 68 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGL 247
D+ K++ + IRVKF GGRE G L G+D + NLVLD T EF+RDP+D Y + + +R +GL
Sbjct: 20 DIKKFMNQKIRVKFDGGREVVGNLIGHDAIFNLVLDKTEEFIRDPNDSYVITEKSRNIGL 79
Query: 248 VVS 256
+V+
Sbjct: 80 IVA 82
Score = 36.3 bits (80), Expect = 0.21
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +1
Query: 256 RGTSVVLICPMDGMEAIPNPFINQE 330
RGTSV LI P++G + I NPFI++E
Sbjct: 83 RGTSVALITPVNGTQEISNPFISEE 107
>UniRef50_P53905 Cluster: U6 snRNA-associated Sm-like protein LSm7;
n=6; Saccharomycetales|Rep: U6 snRNA-associated Sm-like
protein LSm7 - Saccharomyces cerevisiae (Baker's yeast)
Length = 115
Score = 74.1 bits (174), Expect = 9e-13
Identities = 36/74 (48%), Positives = 50/74 (67%), Gaps = 3/74 (4%)
Frame = +2
Query: 41 EKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYK- 217
E ++E+ILDL+KY + IRVK GG+ G+LKGYD L+NLVLD+T E++ +PDD
Sbjct: 20 EGPKREAILDLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNT 79
Query: 218 --LLDDTRALGLVV 253
+ + R LGL V
Sbjct: 80 ELISKNARKLGLTV 93
>UniRef50_Q7SDP3 Cluster: Putative uncharacterized protein
NCU01930.1; n=2; Sordariomycetes|Rep: Putative
uncharacterized protein NCU01930.1 - Neurospora crassa
Length = 132
Score = 73.3 bits (172), Expect = 1e-12
Identities = 34/61 (55%), Positives = 43/61 (70%)
Frame = +2
Query: 14 GSQVTGDNKEKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFL 193
G GD E+ +KE+ILDL KY+++ I VKF GGRE G LKGYD L+NLVLD+ E +
Sbjct: 39 GGAQGGDRGERPKKENILDLKKYMDQRITVKFNGGREVTGTLKGYDALMNLVLDDVQEAV 98
Query: 194 R 196
R
Sbjct: 99 R 99
Score = 35.5 bits (78), Expect = 0.37
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +1
Query: 256 RGTSVVLICPMDGMEAIPNPFINQE 330
RGT +V+I P+DG E I NPF QE
Sbjct: 105 RGTLLVVISPVDGSEVIANPFAQQE 129
>UniRef50_Q6BPZ2 Cluster: Debaryomyces hansenii chromosome E of
strain CBS767 of Debaryomyces hansenii; n=1;
Debaryomyces hansenii|Rep: Debaryomyces hansenii
chromosome E of strain CBS767 of Debaryomyces hansenii -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 78
Score = 64.1 bits (149), Expect = 9e-10
Identities = 27/49 (55%), Positives = 39/49 (79%)
Frame = +2
Query: 50 RKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLR 196
++E+ILDL+ Y +K IRVKF GGR+ G+LKG+D L+NLVL++ E +R
Sbjct: 28 KREAILDLNNYKDKQIRVKFIGGRQVIGVLKGFDQLMNLVLEDVKENIR 76
>UniRef50_Q5CY65 Cluster: Putative uncharacterized protein; n=1;
Cryptosporidium parvum Iowa II|Rep: Putative
uncharacterized protein - Cryptosporidium parvum Iowa II
Length = 73
Score = 57.2 bits (132), Expect = 1e-07
Identities = 25/46 (54%), Positives = 34/46 (73%)
Frame = +2
Query: 56 ESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFL 193
+SIL L+K+ K I+VK GGRE GIL+G+D + NLVLD T E++
Sbjct: 19 KSILGLNKFNNKEIKVKLCGGREVIGILRGFDAVTNLVLDETVEYM 64
>UniRef50_Q8IB57 Cluster: Small nuclear ribonucleoprotein, putative;
n=8; Eukaryota|Rep: Small nuclear ribonucleoprotein,
putative - Plasmodium falciparum (isolate 3D7)
Length = 83
Score = 52.4 bits (120), Expect = 3e-06
Identities = 21/44 (47%), Positives = 30/44 (68%)
Frame = +2
Query: 68 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRD 199
D K++EK +++ G R+ GIL+GYD +NLVLDNT E +D
Sbjct: 13 DFRKFMEKRLQIYLNGNRQVVGILRGYDTFMNLVLDNTMEIKKD 56
>UniRef50_Q9VXE0 Cluster: Probable small nuclear ribonucleoprotein
G; n=14; Eukaryota|Rep: Probable small nuclear
ribonucleoprotein G - Drosophila melanogaster (Fruit
fly)
Length = 76
Score = 52.0 bits (119), Expect = 4e-06
Identities = 20/44 (45%), Positives = 32/44 (72%)
Frame = +2
Query: 68 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRD 199
++ KY++K + +K GGR GIL+G+DP +N+VLD+T E +D
Sbjct: 8 EVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKD 51
>UniRef50_Q9N4G9 Cluster: Probable small nuclear ribonucleoprotein
G; n=16; Bilateria|Rep: Probable small nuclear
ribonucleoprotein G - Caenorhabditis elegans
Length = 77
Score = 50.8 bits (116), Expect = 9e-06
Identities = 18/44 (40%), Positives = 31/44 (70%)
Frame = +2
Query: 68 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRD 199
+L KY++K + +K G R +GIL+G+DP +N+V+D E+ +D
Sbjct: 8 ELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKD 51
>UniRef50_P62308 Cluster: Small nuclear ribonucleoprotein G; n=46;
Eukaryota|Rep: Small nuclear ribonucleoprotein G - Homo
sapiens (Human)
Length = 76
Score = 48.4 bits (110), Expect = 5e-05
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +2
Query: 68 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
+L K+++K + +K GGR GIL+G+DP +NLV+D E
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE 47
>UniRef50_Q6CFJ1 Cluster: Similar to sp|O95777 Homo sapiens U6
snRNA-associated Sm-like protein LSm8; n=1; Yarrowia
lipolytica|Rep: Similar to sp|O95777 Homo sapiens U6
snRNA-associated Sm-like protein LSm8 - Yarrowia
lipolytica (Candida lipolytica)
Length = 97
Score = 47.6 bits (108), Expect = 8e-05
Identities = 22/52 (42%), Positives = 32/52 (61%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLD 226
LS Y+ K + V GR GIL+GYD N++L NT E + PD+P +++D
Sbjct: 4 LSGYINKPVTVITTDGRLILGILQGYDQATNVILSNTRERVITPDEPTEVVD 55
>UniRef50_Q54RX0 Cluster: LSM (Like-Sm) domain-containing protein;
n=1; Dictyostelium discoideum AX4|Rep: LSM (Like-Sm)
domain-containing protein - Dictyostelium discoideum AX4
Length = 85
Score = 45.6 bits (103), Expect = 3e-04
Identities = 20/56 (35%), Positives = 35/56 (62%)
Frame = +2
Query: 53 KESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKL 220
K++ DL+K L+K + +K G R GIL+G+D +N+ L +T E + P + Y++
Sbjct: 5 KQADPDLTKLLDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVV-SPTEKYEI 59
>UniRef50_A0D2M7 Cluster: Chromosome undetermined scaffold_35, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_35,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 83
Score = 45.6 bits (103), Expect = 3e-04
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +2
Query: 53 KESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
KESI+ L ++ K + ++F GGR+ G L +D LNLVLD E
Sbjct: 6 KESIIKLQSHINKEVVIQFQGGRQVKGTLLSFDNQLNLVLDEVRE 50
>UniRef50_Q00XA2 Cluster: Putative small nuclear ribonucleoprotein
E; n=1; Ostreococcus tauri|Rep: Putative small nuclear
ribonucleoprotein E - Ostreococcus tauri
Length = 101
Score = 45.2 bits (102), Expect = 5e-04
Identities = 17/36 (47%), Positives = 27/36 (75%)
Frame = +2
Query: 77 KYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTT 184
+Y++K +R++ G R GIL+G+D LNLVLD++T
Sbjct: 29 RYMDKKLRLRLNGNRSVTGILRGFDQFLNLVLDDST 64
>UniRef50_O74966 Cluster: Probable small nuclear ribonucleoprotein
G; n=7; Ascomycota|Rep: Probable small nuclear
ribonucleoprotein G - Schizosaccharomyces pombe (Fission
yeast)
Length = 77
Score = 45.2 bits (102), Expect = 5e-04
Identities = 18/40 (45%), Positives = 29/40 (72%)
Frame = +2
Query: 68 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
DL KYL++ + V+ G R+ G+L+GYD LN+VL+++ E
Sbjct: 8 DLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIE 47
>UniRef50_Q4PED8 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 134
Score = 44.4 bits (100), Expect = 8e-04
Identities = 21/48 (43%), Positives = 29/48 (60%)
Frame = +2
Query: 44 KRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
K K S +L ++L+K I V GGR+ G L+G+D LNLV+D E
Sbjct: 47 KMAKVSQPELKRFLDKRIAVNIQGGRKIQGTLRGFDMFLNLVVDEAIE 94
>UniRef50_UPI000049841B Cluster: small nuclear ribonucleoprotein G;
n=2; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
ribonucleoprotein G - Entamoeba histolytica HM-1:IMSS
Length = 81
Score = 43.6 bits (98), Expect = 0.001
Identities = 22/46 (47%), Positives = 27/46 (58%)
Frame = +2
Query: 68 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPD 205
+L YLEK I VK G R G+L GYD +NLVLD + +PD
Sbjct: 7 ELKHYLEKRILVKIHGKRSIIGVLSGYDEYMNLVLDEAYD-ASNPD 51
>UniRef50_Q4Q9J1 Cluster: Lsm7p protein, putative; n=6;
Trypanosomatidae|Rep: Lsm7p protein, putative -
Leishmania major
Length = 91
Score = 43.2 bits (97), Expect = 0.002
Identities = 23/51 (45%), Positives = 32/51 (62%)
Frame = +2
Query: 47 RRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRD 199
++KE IL L KYL++ I V G E G+LKG+D +NLVL + + RD
Sbjct: 10 KKKEGILSLEKYLDRKIVVS-QKGHEVHGVLKGFDNNVNLVLADAELWHRD 59
>UniRef50_Q4MZU2 Cluster: U6 snRNA-associated Sm-like protein LSm8,
putative; n=2; Piroplasmida|Rep: U6 snRNA-associated
Sm-like protein LSm8, putative - Theileria parva
Length = 94
Score = 42.7 bits (96), Expect = 0.002
Identities = 22/52 (42%), Positives = 31/52 (59%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLD 226
L +++E S+ V GR G+LKG+D L NLVL N E + PD P + L+
Sbjct: 5 LEQFIECSVFVISVDGRVFVGVLKGFDQLTNLVLYNCLERVYHPDAPVEELE 56
>UniRef50_Q6CRN4 Cluster: Similar to sp|P40204 Saccharomyces
cerevisiae YFL017wa SNP2 snRNP G protein; n=1;
Kluyveromyces lactis|Rep: Similar to sp|P40204
Saccharomyces cerevisiae YFL017wa SNP2 snRNP G protein -
Kluyveromyces lactis (Yeast) (Candida sphaerica)
Length = 71
Score = 42.7 bits (96), Expect = 0.002
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +2
Query: 77 KYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRD 199
+Y++K + ++ G R+ GIL+GYD LNLVLDN + +
Sbjct: 6 QYMDKKLILQLNGNRKIIGILRGYDAFLNLVLDNPIQIFEE 46
>UniRef50_A2R8P2 Cluster: Function: snRPG of H. sapiens is
associated with small nuclear ribonucleoproteins; n=1;
Aspergillus niger|Rep: Function: snRPG of H. sapiens is
associated with small nuclear ribonucleoproteins -
Aspergillus niger
Length = 105
Score = 41.5 bits (93), Expect = 0.006
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +2
Query: 41 EKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
+K + +I +Y+EK + + G R+ GIL+GYD +N+VLD E
Sbjct: 9 KKSTEANIAVFQQYMEKRVFCQLNGNRKVIGILRGYDVFMNIVLDEAFE 57
>UniRef50_Q8SRW7 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN G; n=1;
Encephalitozoon cuniculi|Rep: SMALL NUCLEAR
RIBONUCLEOPROTEIN G - Encephalitozoon cuniculi
Length = 78
Score = 41.1 bits (92), Expect = 0.007
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +2
Query: 53 KESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
K ++ +L+ L K I V+ GG G+L GYD +N+VL TE
Sbjct: 3 KSAVPNLASLLHKRIVVRIGGGHTLKGLLTGYDAFMNIVLSEVTE 47
>UniRef50_P57670 Cluster: Putative snRNP Sm-like protein; n=4;
Thermoplasmatales|Rep: Putative snRNP Sm-like protein -
Thermoplasma acidophilum
Length = 83
Score = 39.5 bits (88), Expect = 0.023
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFL 193
L L +++ + G RE +GIL+GYD +N+VL N +E +
Sbjct: 14 LKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASEII 54
>UniRef50_UPI0000D55DF4 Cluster: PREDICTED: similar to CG31950-PA;
n=2; Endopterygota|Rep: PREDICTED: similar to CG31950-PA
- Tribolium castaneum
Length = 134
Score = 39.1 bits (87), Expect = 0.030
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGLV 250
L +L KS+R++ GR G+ D N++L + TE+L D+ +++ R LGLV
Sbjct: 39 LRSWLNKSLRIQMFDGRVLVGVFLCTDRDANVILGSCTEYLPAEDNGDGTIEEPRMLGLV 98
Query: 251 V 253
+
Sbjct: 99 M 99
>UniRef50_Q4UC24 Cluster: U6 snRNA-associated Sm-like potein,
putative; n=1; Theileria annulata|Rep: U6
snRNA-associated Sm-like potein, putative - Theileria
annulata
Length = 113
Score = 37.9 bits (84), Expect = 0.069
Identities = 20/45 (44%), Positives = 26/45 (57%)
Frame = +2
Query: 92 SIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLD 226
S+ V GR G+LKG+D L NLVL N E + PD P + L+
Sbjct: 19 SVFVISVDGRVFVGVLKGFDQLTNLVLYNCLERVYHPDAPVEELE 63
>UniRef50_Q4Q5H5 Cluster: Small nuclear ribonucleoprotein, putative;
n=5; Trypanosomatidae|Rep: Small nuclear
ribonucleoprotein, putative - Leishmania major
Length = 81
Score = 37.9 bits (84), Expect = 0.069
Identities = 16/48 (33%), Positives = 32/48 (66%)
Frame = +2
Query: 56 ESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRD 199
+++ +L+ ++EK I VK GGR +G+L+G D +++VL + + R+
Sbjct: 5 KTLPNLNHFMEKRIVVKIQGGRSISGVLRGVDEHMSIVLHDAMDETRN 52
>UniRef50_Q2FT45 Cluster: Like-Sm ribonucleoprotein, core; n=3;
Methanomicrobiales|Rep: Like-Sm ribonucleoprotein, core
- Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 80
Score = 37.9 bits (84), Expect = 0.069
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +2
Query: 47 RRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLR 196
+R ILD + + + GGRE G+L+GYD +NLVLD E ++
Sbjct: 8 KRPMDILD-QVLNRQPVLISLKGGREIKGVLQGYDVHMNLVLDKAEEIVQ 56
>UniRef50_P40089 Cluster: U6 snRNA-associated Sm-like protein LSm5;
n=5; Saccharomycetales|Rep: U6 snRNA-associated Sm-like
protein LSm5 - Saccharomyces cerevisiae (Baker's yeast)
Length = 93
Score = 37.5 bits (83), Expect = 0.091
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDD 208
+ K + + + + RE G L G+D +N++L++ E+L DP+D
Sbjct: 12 IDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPED 57
>UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core,
putative; n=2; Culicidae|Rep: Small nuclear
ribonucleoprotein, core, putative - Aedes aegypti
(Yellowfever mosquito)
Length = 162
Score = 37.1 bits (82), Expect = 0.12
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 56 ESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
E++ L Y+ ++ + A GR G LKG+D +N++LD + E
Sbjct: 66 ETMSGLESYVNTTVSIITADGRNFVGTLKGFDQTINIILDESHE 109
>UniRef50_A0D0Y9 Cluster: Chromosome undetermined scaffold_33, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_33,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 104
Score = 37.1 bits (82), Expect = 0.12
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +2
Query: 68 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFL 193
DL+KY K +++K R G + G+D +NLVLD+ E +
Sbjct: 17 DLNKYFGKRLKIKLNAKRTIIGTVIGFDIFMNLVLDHCKELI 58
>UniRef50_O95777 Cluster: U6 snRNA-associated Sm-like protein LSm8;
n=23; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm8 - Homo sapiens (Human)
Length = 96
Score = 36.7 bits (81), Expect = 0.16
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
L Y+ +++ V + GR G LKG+D +NL+LD + E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>UniRef50_Q2URY1 Cluster: Predicted protein; n=1; Aspergillus
oryzae|Rep: Predicted protein - Aspergillus oryzae
Length = 122
Score = 36.3 bits (80), Expect = 0.21
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 83 LEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
+EK + + G R+ GIL+GYD +N+VLD E
Sbjct: 1 MEKRVFCQLNGNRKVIGILRGYDVFMNIVLDEAFE 35
>UniRef50_UPI0000499B3D Cluster: hypothetical protein 7.t00009; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
protein 7.t00009 - Entamoeba histolytica HM-1:IMSS
Length = 103
Score = 35.9 bits (79), Expect = 0.28
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Frame = +2
Query: 50 RKESILDLSKYLEKSIRVKFAGGREA------------AGILKGYDPLLNLVLDNTTEFL 193
R ++ DL Y+EK + V+F G+E+ GIL+ YD NL L N + +
Sbjct: 6 RYTTLSDLGSYIEKEVIVQFNDGKESLKLYLIYILTQVEGILQNYDDRFNLFLTNAIQHI 65
Query: 194 RDPDDPYKLLDDTRALGLV 250
+ +D L TR LG V
Sbjct: 66 NE-NDKNTSLKTTRKLGEV 83
>UniRef50_Q4N4E0 Cluster: Small nuclear ribonucleoprotein G,
putative; n=2; Piroplasmida|Rep: Small nuclear
ribonucleoprotein G, putative - Theileria parva
Length = 86
Score = 35.9 bits (79), Expect = 0.28
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 101 VKFAGGREAAGILKGYDPLLNLVLDNTTE 187
V G R G+L+GYD +N+VLDN E
Sbjct: 27 VHLNGSRHVVGVLRGYDTFMNIVLDNALE 55
>UniRef50_Q0WMZ9 Cluster: Sm-like protein; n=19; Eukaryota|Rep:
Sm-like protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 88
Score = 35.5 bits (78), Expect = 0.37
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEF 190
+ + + I V G +E GILKG+D +N+VL++ TE+
Sbjct: 14 IDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEY 53
>UniRef50_Q6BPZ1 Cluster: Debaryomyces hansenii chromosome E of
strain CBS767 of Debaryomyces hansenii; n=1;
Debaryomyces hansenii|Rep: Debaryomyces hansenii
chromosome E of strain CBS767 of Debaryomyces hansenii -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 77
Score = 35.5 bits (78), Expect = 0.37
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +1
Query: 256 RGTSVVLICPMDGMEAIPNPFINQE 330
RG S++ I P+DG E I NPF NQE
Sbjct: 52 RGPSLLTISPVDGSEIIDNPFANQE 76
>UniRef50_Q677D4 Cluster: Small nuclear ribonucleoprotein
polypeptide G; n=1; Hyacinthus orientalis|Rep: Small
nuclear ribonucleoprotein polypeptide G - Hyacinthus
orientalis (Common hyacinth)
Length = 96
Score = 34.7 bits (76), Expect = 0.64
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 95 IRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
+++K R G L+G+D +NLV+DNT E
Sbjct: 34 LQIKLNANRVVVGTLRGFDQFMNLVIDNTME 64
>UniRef50_Q7QZM9 Cluster: GLP_680_47464_47838; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_680_47464_47838 - Giardia lamblia
ATCC 50803
Length = 124
Score = 34.7 bits (76), Expect = 0.64
Identities = 20/54 (37%), Positives = 24/54 (44%)
Frame = +2
Query: 26 TGDNKEKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
T NK + D L K + V+ GR G+LK YD LNLV TE
Sbjct: 41 TMSNKISDSPYAFFDEVLALRKPVLVQLRSGRFITGVLKAYDRHLNLVFSEATE 94
>UniRef50_Q8ZYP8 Cluster: Small nuclear ribonucleoprotein homolog;
n=4; Pyrobaculum|Rep: Small nuclear ribonucleoprotein
homolog - Pyrobaculum aerophilum
Length = 85
Score = 34.7 bits (76), Expect = 0.64
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
L+K L K I + GG G+L YD +NLVL++ E
Sbjct: 16 LTKMLNKEIIARLKGGVAVKGVLTAYDGCMNLVLNDAAE 54
>UniRef50_Q9Y7M4 Cluster: Probable U6 snRNA-associated Sm-like
protein LSm3; n=8; Ascomycota|Rep: Probable U6
snRNA-associated Sm-like protein LSm3 -
Schizosaccharomyces pombe (Fission yeast)
Length = 93
Score = 34.7 bits (76), Expect = 0.64
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +2
Query: 65 LDLSKY-LEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRAL 241
LDL + L++ + VK G RE G L YD LN+VL + E + DD + D +AL
Sbjct: 11 LDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDD--EETDKDKAL 68
Query: 242 GLVVSEVHQLF 274
+ LF
Sbjct: 69 KTIRKHYEMLF 79
>UniRef50_Q6QA14 Cluster: Lsm8p; n=6; Trypanosomatidae|Rep: Lsm8p -
Trypanosoma brucei
Length = 129
Score = 34.3 bits (75), Expect = 0.85
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPD 205
LS+YL + + V GR G+L D L+NLVL + E + D +
Sbjct: 2 LSQYLRRRVSVVTVDGRYLVGVLHAADQLMNLVLTSCAERVFDDE 46
>UniRef50_A3DMZ9 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Staphylothermus marinus F1|Rep: Like-Sm
ribonucleoprotein, core - Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1)
Length = 149
Score = 34.3 bits (75), Expect = 0.85
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +2
Query: 68 DLSKYLEKSIRVKFAGGREAAGILKGYD-PLLNLVLDNTTE 187
+L+ ++K ++V A GR GIL G+D P LN++L+N +
Sbjct: 13 ELAGLVDKKVKVILADGRFYEGILTGFDHPSLNILLENAVD 53
>UniRef50_O29386 Cluster: Putative snRNP Sm-like protein; n=10;
Archaea|Rep: Putative snRNP Sm-like protein -
Archaeoglobus fulgidus
Length = 77
Score = 34.3 bits (75), Expect = 0.85
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
L++ L+ + V+ GGRE G L GYD +NLVL + E
Sbjct: 9 LNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEE 47
>UniRef50_UPI00015BD351 Cluster: UPI00015BD351 related cluster; n=1;
unknown|Rep: UPI00015BD351 UniRef100 entry - unknown
Length = 493
Score = 33.9 bits (74), Expect = 1.1
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = -2
Query: 383 FFLPYLKIYSYHNNYSYPSWLINGFGIASIPSIGHIKTTDVPRKQQDLKLL 231
FF+P L++ Y N Y Y SW+I+ ++ + +I I + Q DLK L
Sbjct: 259 FFIPLLRLVPYVNQYLYSSWMIS---VSILAAITMIVGNALALVQSDLKRL 306
>UniRef50_A7PDU1 Cluster: Chromosome chr11 scaffold_13, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr11 scaffold_13, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 242
Score = 33.9 bits (74), Expect = 1.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
L+ YL+K + V GR+ G+L+ +D N VL+ E
Sbjct: 15 LASYLDKKLLVLLRDGRKLLGVLRSFDQFANAVLEGACE 53
>UniRef50_A2E014 Cluster: Sm protein; n=2; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 84
Score = 33.9 bits (74), Expect = 1.1
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = +2
Query: 41 EKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKL 220
EK + + LS +EK ++VK G+E G+L YD N++L + E + D K
Sbjct: 3 EKPMPQDYIRLS--MEKRVKVKVQEGQELEGVLHAYDEHYNIILGDVLESIMGLDKNGKF 60
Query: 221 L 223
+
Sbjct: 61 I 61
>UniRef50_Q4JAL0 Cluster: Sm-like protein; n=3; Sulfolobaceae|Rep:
Sm-like protein - Sulfolobus acidocaldarius
Length = 87
Score = 33.9 bits (74), Expect = 1.1
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDP 211
L L K + VK G E G L+ D +NLVL + TE+ DP
Sbjct: 12 LKTALNKIVLVKLKNGEEYVGRLEQSDGTMNLVLKDCTEYREGTSDP 58
>UniRef50_Q3LW01 Cluster: MRNA splicing factor; n=1; Bigelowiella
natans|Rep: MRNA splicing factor - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 82
Score = 33.5 bits (73), Expect = 1.5
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Frame = +2
Query: 59 SILDLSKYLEKSIRV------KFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKL 220
S + L KY+ K I + + G + L YD +NLVL + E++ D D ++
Sbjct: 4 STISLKKYINKRINIVTKNYDRINGRYKKFYRLLAYDKFMNLVLSDVEEYINDKKDSQEI 63
Query: 221 LDDTRALGLVV---SEVHQLF 274
R LGL+V SE+ LF
Sbjct: 64 ---RRVLGLMVLRGSEIIYLF 81
>UniRef50_Q54F39 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 394
Score = 33.5 bits (73), Expect = 1.5
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +2
Query: 26 TGDNKEKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
T DN++K + + IL S L+K ++V FAGG +K LL + D + +
Sbjct: 3 TTDNEKKVKLQQILTDSLLLQKQVKVIFAGGNNNETTIKQITTLLGQLRDKSKQ 56
>UniRef50_Q7S1Q3 Cluster: Putative uncharacterized protein
NCU09512.1; n=1; Neurospora crassa|Rep: Putative
uncharacterized protein NCU09512.1 - Neurospora crassa
Length = 168
Score = 33.5 bits (73), Expect = 1.5
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = +2
Query: 83 LEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRAL 241
L++ + VK G RE G L YD NLVL E + DD DD +A+
Sbjct: 22 LDEVVCVKLRGDRELKGRLHAYDSHCNLVLGEVEETIYVVDDEDTEEDDLKAV 74
>UniRef50_Q6CGS0 Cluster: Similar to sp|P47017 Saccharomyces
cerevisiae YJL124c LSM1 Sm-like; n=1; Yarrowia
lipolytica|Rep: Similar to sp|P47017 Saccharomyces
cerevisiae YJL124c LSM1 Sm-like - Yarrowia lipolytica
(Candida lipolytica)
Length = 144
Score = 33.5 bits (73), Expect = 1.5
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 83 LEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE-FLRDPDDPY 214
+++ + V GGR+ GIL+ +D NLVL +T E + P+ Y
Sbjct: 24 IDRKVVVTLRGGRKFFGILRSFDQFANLVLQDTYEKYFAVPEKVY 68
>UniRef50_Q6BR90 Cluster: Similar to CA5853|CaLSM6 Candida albicans
CaLSM6; n=3; Ascomycota|Rep: Similar to CA5853|CaLSM6
Candida albicans CaLSM6 - Debaryomyces hansenii (Yeast)
(Torulaspora hansenii)
Length = 84
Score = 33.5 bits (73), Expect = 1.5
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFL 193
LS+ + S+ V+ G E G L+ D +N+VLD T EF+
Sbjct: 21 LSEIIGSSVTVRLHNGVEYLGNLQSIDGYMNIVLDETKEFV 61
>UniRef50_Q4N5C8 Cluster: Small nuclear ribonucleoprotein B,
putative; n=3; Eukaryota|Rep: Small nuclear
ribonucleoprotein B, putative - Theileria parva
Length = 155
Score = 33.1 bits (72), Expect = 2.0
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGLV 250
+ +L+ ++RV R+ G L YD +NLVL + EF + R LG V
Sbjct: 8 MQHWLQYNVRVTLKDNRKFVGTLVAYDKYMNLVLSDCEEFRMTLGKDKNRTEVKRTLGFV 67
Query: 251 V 253
+
Sbjct: 68 L 68
>UniRef50_Q72NN3 Cluster: Putative uncharacterized protein; n=1;
Leptospira interrogans serovar Copenhageni|Rep: Putative
uncharacterized protein - Leptospira interrogans
serogroup Icterohaemorrhagiae serovarcopenhageni
Length = 132
Score = 32.7 bits (71), Expect = 2.6
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = -1
Query: 102 TRMLFSKYLLRSNIDSFLLFSLLSPVTWLPFDF 4
+R FSKY RSNI FL+ SLLS + L F
Sbjct: 3 SRYSFSKYFTRSNIIQFLVLSLLSQILILIITF 35
>UniRef50_A2DPP4 Cluster: Phosphatidylinositol 3-and 4-kinase family
protein; n=1; Trichomonas vaginalis G3|Rep:
Phosphatidylinositol 3-and 4-kinase family protein -
Trichomonas vaginalis G3
Length = 2286
Score = 32.7 bits (71), Expect = 2.6
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = -2
Query: 371 YLKIYSYHNNYSYPSWLINGFGIASIPSIGHIKTTDVPRKQQ-DLKLLCHPKVCMGHQDL 195
Y + HN Y Y L+NGF + P I H D Q L +L H + +DL
Sbjct: 150 YSSLCILHNAYGYADQLVNGFVTQAFPQIMHATFCDDKELQHITLSVLKHHLMSQKPKDL 209
Query: 194 LETP*YCLAQ 165
+C+ Q
Sbjct: 210 DRWFNFCIEQ 219
>UniRef50_Q9HPS2 Cluster: SnRNP homolog; n=2; Halobacteriaceae|Rep:
SnRNP homolog - Halobacterium salinarium (Halobacterium
halobium)
Length = 69
Score = 32.7 bits (71), Expect = 2.6
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLD 175
L + LE+++ V+ G E G+L GYD +N+V++
Sbjct: 18 LEESLEETVTVRLKDGDEFTGVLTGYDQHMNVVIE 52
>UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Methanobacterium thermoautotrophicum
Length = 81
Score = 32.7 bits (71), Expect = 2.6
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
L L + +K G RE G+LK +D +NLVL++ E
Sbjct: 18 LGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEE 56
>UniRef50_Q9Y4Y9 Cluster: U6 snRNA-associated Sm-like protein LSm5;
n=27; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm5 - Homo sapiens (Human)
Length = 91
Score = 32.7 bits (71), Expect = 2.6
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPD 205
+ K + I + +E G L G+D +N+VL++ TEF P+
Sbjct: 18 VDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPE 62
>UniRef50_Q40942 Cluster: Small nucleolar ribonucleoprotein E
homolog; n=2; Bigelowiella natans|Rep: Small nucleolar
ribonucleoprotein E homolog - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 71
Score = 32.3 bits (70), Expect = 3.4
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +2
Query: 53 KESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTT 184
K +I DL ++E+ I+++ G L+G+D LN+VL+ ++
Sbjct: 4 KINIPDLKLFMEEEIQIQLKNKLCLKGTLRGFDQFLNIVLEKSS 47
>UniRef50_Q59ZT4 Cluster: Potential RNA processing complex subunit
Lsm5; n=2; Saccharomycetales|Rep: Potential RNA
processing complex subunit Lsm5 - Candida albicans
(Yeast)
Length = 119
Score = 32.3 bits (70), Expect = 3.4
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
+ + + K +RV G +E G L G+D +N+VL++ TE
Sbjct: 58 IDRSVGKRVRVLMTGDKEFNGKLIGFDDYVNMVLEDVTE 96
>UniRef50_Q701X8 Cluster: Putative uncharacterized protein; n=1;
uncultured crenarchaeote|Rep: Putative uncharacterized
protein - uncultured crenarchaeote
Length = 89
Score = 32.3 bits (70), Expect = 3.4
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFL 193
L + + K + VK G R G +KG+D +N+V+ TE +
Sbjct: 11 LQESVGKIVLVKLKGRRSVKGKIKGFDKQMNIVITEATEVI 51
>UniRef50_O74483 Cluster: U6 snRNA-associated Sm-like protein LSm8;
n=1; Schizosaccharomyces pombe|Rep: U6 snRNA-associated
Sm-like protein LSm8 - Schizosaccharomyces pombe
(Fission yeast)
Length = 94
Score = 32.3 bits (70), Expect = 3.4
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 65 LDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
+ L+ ++E+ ++V GR G LKG+D NL+L ++ E
Sbjct: 1 MSLADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFE 41
>UniRef50_Q8IL38 Cluster: Small nuclear ribonuclear protein,
putative; n=3; Plasmodium|Rep: Small nuclear ribonuclear
protein, putative - Plasmodium falciparum (isolate 3D7)
Length = 101
Score = 31.9 bits (69), Expect = 4.5
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEF 190
+ K + I + G +E G L G+D +N+VL++ TE+
Sbjct: 16 MDKCIGSKIWIMMKGDKEIVGKLVGFDEYVNMVLEDVTEY 55
>UniRef50_Q5CME6 Cluster: Similar to small nuclear
ribonucleoprotein; n=2; Cryptosporidium|Rep: Similar to
small nuclear ribonucleoprotein - Cryptosporidium
hominis
Length = 139
Score = 31.9 bits (69), Expect = 4.5
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEF--LRDPDDPYKLLDDTRALG 244
+ KY+ IRV R G L +D +NLVL + E+ ++ ++P +L R+LG
Sbjct: 1 MQKYINYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEYRRVKKGEEPKEL---KRSLG 57
Query: 245 LVV 253
L++
Sbjct: 58 LIM 60
>UniRef50_Q4WP21 Cluster: Small nuclear ribonucleoprotein SmB,
putative; n=2; Eukaryota|Rep: Small nuclear
ribonucleoprotein SmB, putative - Aspergillus fumigatus
(Sartorya fumigata)
Length = 357
Score = 31.9 bits (69), Expect = 4.5
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 50 RKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLR 196
R+++ D + +R+ GR+ G + +D +NLVL +T EF R
Sbjct: 120 RQQAGQDADTLINYRMRITLTDGRQMTGQMLAFDKHMNLVLADTEEFRR 168
>UniRef50_Q4PA95 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 148
Score = 31.9 bits (69), Expect = 4.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 83 LEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
++K + V G++ G+L+ YD NLVL +T E
Sbjct: 22 VDKKMLVVLRDGKKLIGVLRSYDQFANLVLQDTVE 56
>UniRef50_Q2H3V8 Cluster: Predicted protein; n=1; Chaetomium
globosum|Rep: Predicted protein - Chaetomium globosum
(Soil fungus)
Length = 573
Score = 31.9 bits (69), Expect = 4.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 356 SYHNNYSYPSWLINGFGIASIPSIGHIKTTDVPRKQQDLKLLCHP 222
+Y+N Y PS G+G ++ TT +P D KL CHP
Sbjct: 401 TYNNTY-IPSSGSGGYGYGYGGGQSYMSTTAIPTPTADAKLTCHP 444
>UniRef50_Q0UCR7 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 134
Score = 31.9 bits (69), Expect = 4.5
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 38 KEKRRKESILDLSKY-LEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
+EK LDL + +++ + VK G RE G L YD NLVL + E
Sbjct: 2 EEKEETNEPLDLVRLCIDEVVIVKLRGDRELKGRLHAYDSHCNLVLGDVEE 52
>UniRef50_A3H6D3 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Caldivirga maquilingensis IC-167|Rep: Like-Sm
ribonucleoprotein, core - Caldivirga maquilingensis
IC-167
Length = 86
Score = 31.9 bits (69), Expect = 4.5
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
L + KS+ VK GR +G L+ D +N+VLD+ E
Sbjct: 16 LGMMVNKSVVVKLKAGRVLSGTLRFIDQCMNIVLDDAEE 54
>UniRef50_Q01T38 Cluster: Putative uncharacterized protein; n=1;
Solibacter usitatus Ellin6076|Rep: Putative
uncharacterized protein - Solibacter usitatus (strain
Ellin6076)
Length = 1221
Score = 31.5 bits (68), Expect = 6.0
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +2
Query: 26 TGDNKEKRRKESILDLSKYLEKSI--RVKFAGGREAAGILKGYDPLLNLVLD 175
T + ++R+ I +SK + + + R + GRE ++GYD LNLV+D
Sbjct: 182 TEQGEVRQRRPQIYQVSKGIRRDLSGRYRIDNGRELRLDIQGYDRNLNLVID 233
>UniRef50_Q8ILU8 Cluster: Ribonucleoprotein, putative; n=2;
Plasmodium|Rep: Ribonucleoprotein, putative - Plasmodium
falciparum (isolate 3D7)
Length = 201
Score = 31.5 bits (68), Expect = 6.0
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGLV 250
L +L+ +RV + R G YD +N+VL + EF + L + R +GL+
Sbjct: 7 LETWLQYRVRVTISDTRYFVGTFLSYDRHMNIVLVDAEEFRKVKSQENSLKEIKRVVGLI 66
Query: 251 V 253
+
Sbjct: 67 L 67
>UniRef50_Q8IB34 Cluster: Ribonucleoprotein, putative; n=1;
Plasmodium falciparum 3D7|Rep: Ribonucleoprotein,
putative - Plasmodium falciparum (isolate 3D7)
Length = 74
Score = 31.5 bits (68), Expect = 6.0
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 83 LEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
+E+ I +K G RE G L YD LN++L N E
Sbjct: 1 MEEEIFLKCKGDRELIGKLDAYDNHLNMILSNVRE 35
>UniRef50_Q4YVP4 Cluster: Ribonucleoprotein, putative; n=3;
Plasmodium (Vinckeia)|Rep: Ribonucleoprotein, putative -
Plasmodium berghei
Length = 194
Score = 31.5 bits (68), Expect = 6.0
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGLV 250
L +L+ +RV + R G YD +N+VL + EF R + + R +GL+
Sbjct: 7 LESWLQYRVRVTISDTRYYVGTFLSYDRHMNIVLVDAEEFRRVKNKENNFKEIKRVVGLI 66
Query: 251 V 253
+
Sbjct: 67 L 67
>UniRef50_Q4N728 Cluster: U6 small nuclear ribonucleoprotein,
putative; n=3; Aconoidasida|Rep: U6 small nuclear
ribonucleoprotein, putative - Theileria parva
Length = 77
Score = 31.5 bits (68), Expect = 6.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFL 193
++ K + VK G + G L D +NL ++NT EFL
Sbjct: 10 ITSITRKPVLVKLNNGSDFKGTLASLDERMNLAMENTCEFL 50
>UniRef50_A2GMH6 Cluster: Sm protein; n=3; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 81
Score = 31.5 bits (68), Expect = 6.0
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 68 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVL 172
+L +L+K +++ RE +GIL G+D +NL +
Sbjct: 14 ELKGHLQKKVKIMSNKDREVSGILTGFDHFMNLTI 48
>UniRef50_Q6BK43 Cluster: Similar to sp|P40089 Saccharomyces
cerevisiae YER146w LSM5 Sm-like; n=1; Debaryomyces
hansenii|Rep: Similar to sp|P40089 Saccharomyces
cerevisiae YER146w LSM5 Sm-like - Debaryomyces hansenii
(Yeast) (Torulaspora hansenii)
Length = 93
Score = 31.5 bits (68), Expect = 6.0
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEF 190
+ K + I+V +E G L G+D +N+VL+N EF
Sbjct: 27 IDKSIGHKIQVLMTNDKEFKGTLIGFDDYVNMVLENVEEF 66
>UniRef50_Q0UX37 Cluster: Predicted protein; n=1; Phaeosphaeria
nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 80
Score = 31.5 bits (68), Expect = 6.0
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
+ K + I V GG+E G L G+D +N+VL+ TE
Sbjct: 21 IDKCVGSQIWVIMNGGKEFTGKLVGFDDYVNMVLEEVTE 59
>UniRef50_A3LX11 Cluster: Predicted protein; n=3;
Saccharomycetaceae|Rep: Predicted protein - Pichia
stipitis (Yeast)
Length = 92
Score = 31.5 bits (68), Expect = 6.0
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +2
Query: 77 KYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGLV 250
+++ ++RV GR GIL DP NL+L N E D P + R +GLV
Sbjct: 13 QFIGSNLRVAIKDGRVVTGILTVIDPFGNLLLSNVIEESEDIISPPGI--HKRDIGLV 68
>UniRef50_Q8WZ42 Cluster: Titin; n=65; Eukaryota|Rep: Titin - Homo
sapiens (Human)
Length = 34350
Score = 31.5 bits (68), Expect = 6.0
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +2
Query: 14 GSQVTGDNKEKRRKESILDLSKYLEKSIRVKFAGGRE--AAGILKGYDPLLNLVLDNTTE 187
GS+VTG + EK+ + SI L + + GRE A G+++G D + +N+
Sbjct: 28712 GSEVTGFHVEKKERNSI------LWQKVNTSPISGREYRATGLVEGLDYQFRVYAENSAG 28765
Query: 188 FLRDPDDPYK 217
L P DP K
Sbjct: 28766 -LSSPSDPSK 28774
>UniRef50_Q8RI91 Cluster: Putative uncharacterized protein FN1720;
n=2; Fusobacterium nucleatum|Rep: Putative
uncharacterized protein FN1720 - Fusobacterium nucleatum
subsp. nucleatum
Length = 242
Score = 31.1 bits (67), Expect = 7.9
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +2
Query: 131 GILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGLVVSEVHQLF*YVQWMVWKQYQ 310
GI + Y +LN +LD FL DD Y ++D + + E+ YV ++ K+Y+
Sbjct: 147 GIEERYKKILNTILDEEKLFLSKKDDCY-IIDVVSEVRKDLEEIDFYIFYVNYLSKKEYE 205
>UniRef50_Q73NK7 Cluster: Putative uncharacterized protein; n=1;
Treponema denticola|Rep: Putative uncharacterized
protein - Treponema denticola
Length = 647
Score = 31.1 bits (67), Expect = 7.9
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 101 VKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPY 214
+K GG E G LKGY L+ +++NT F+ + Y
Sbjct: 42 IKRRGGTERIGKLKGYARLIPFIVNNTLSFIFEIGSEY 79
>UniRef50_Q4ABY8 Cluster: 117M18_32; n=1; Brassica rapa|Rep:
117M18_32 - Brassica campestris (Field mustard)
Length = 630
Score = 31.1 bits (67), Expect = 7.9
Identities = 24/72 (33%), Positives = 35/72 (48%)
Frame = +2
Query: 26 TGDNKEKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPD 205
T D KE I+DLSK L + V F+ + G +G + LL+ ++ E +RD D
Sbjct: 205 TSDPKENSSLSYIIDLSKVLPSEVTVGFSA--TSGGSTEG-NRLLSWEYSSSLELIRD-D 260
Query: 206 DPYKLLDDTRAL 241
D K D + L
Sbjct: 261 DVEKTEKDRKGL 272
>UniRef50_Q5CLJ8 Cluster: U6 snRNA-associated sm-like protein; n=2;
Cryptosporidium|Rep: U6 snRNA-associated sm-like protein
- Cryptosporidium hominis
Length = 98
Score = 31.1 bits (67), Expect = 7.9
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPD 205
L +++ K++ V + G L G+D L N+VL N +E + + D
Sbjct: 6 LEQFINKTVSVLTVDNKVYVGNLVGFDQLTNIVLQNCSEKIYNKD 50
>UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1;
Aeropyrum pernix|Rep: Putative snRNP Sm-like protein -
Aeropyrum pernix
Length = 77
Score = 31.1 bits (67), Expect = 7.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 80 YLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
Y++ + VK G G+LK YD LN++L + E
Sbjct: 16 YVDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDAEE 51
>UniRef50_Q9UUI1 Cluster: U6 snRNA-associated Sm-like protein LSm6;
n=33; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm6 - Schizosaccharomyces pombe (Fission yeast)
Length = 75
Score = 31.1 bits (67), Expect = 7.9
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFL 193
L+K + K + ++ + G + GIL D +NL L+ T E++
Sbjct: 9 LNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYV 49
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 350,201,784
Number of Sequences: 1657284
Number of extensions: 6436406
Number of successful extensions: 18615
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 18264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18604
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16080341554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -