Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1030
(393 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 82 3e-17
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces... 45 4e-06
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha... 35 0.005
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch... 32 0.028
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha... 31 0.064
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch... 30 0.11
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch... 26 2.4
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 26 2.4
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 25 3.2
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces... 25 4.2
SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein Smf1|Schizosac... 25 4.2
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 4.2
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 24 7.3
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 24 9.7
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 81.8 bits (193), Expect = 3e-17
Identities = 43/84 (51%), Positives = 56/84 (66%)
Frame = +2
Query: 2 EKSKGSQVTGDNKEKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNT 181
+K G + E+ RKESILDLS+Y ++ I+ F GGR+ GILKG+D L+NLVLD+
Sbjct: 5 QKRPGPGNSSQPTERPRKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDV 64
Query: 182 TEFLRDPDDPYKLLDDTRALGLVV 253
E LR+P+D KL R LGLVV
Sbjct: 65 EEQLRNPEDG-KLTGAIRKLGLVV 87
Score = 41.9 bits (94), Expect = 3e-05
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +1
Query: 256 RGTSVVLICPMDGMEAIPNPFINQE 330
RGT++VLI PMDG E IPNPF+ E
Sbjct: 89 RGTTLVLIAPMDGSEEIPNPFVQAE 113
>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 77
Score = 45.2 bits (102), Expect = 4e-06
Identities = 18/40 (45%), Positives = 29/40 (72%)
Frame = +2
Query: 68 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
DL KYL++ + V+ G R+ G+L+GYD LN+VL+++ E
Sbjct: 8 DLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIE 47
>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 93
Score = 34.7 bits (76), Expect = 0.005
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +2
Query: 65 LDLSKY-LEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRAL 241
LDL + L++ + VK G RE G L YD LN+VL + E + DD + D +AL
Sbjct: 11 LDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDD--EETDKDKAL 68
Query: 242 GLVVSEVHQLF 274
+ LF
Sbjct: 69 KTIRKHYEMLF 79
>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 94
Score = 32.3 bits (70), Expect = 0.028
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 65 LDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
+ L+ ++E+ ++V GR G LKG+D NL+L ++ E
Sbjct: 1 MSLADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFE 41
>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 75
Score = 31.1 bits (67), Expect = 0.064
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFL 193
L+K + K + ++ + G + GIL D +NL L+ T E++
Sbjct: 9 LNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYV 49
>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 80
Score = 30.3 bits (65), Expect = 0.11
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEF 190
+ K + ++ V RE AG L G+D +N+VL + TE+
Sbjct: 11 IDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEY 50
>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 96
Score = 25.8 bits (54), Expect = 2.4
Identities = 18/67 (26%), Positives = 26/67 (38%)
Frame = +2
Query: 83 LEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGLVVSEV 262
++ + V+ GILK D LN+ L+N + + D G VV V
Sbjct: 11 IDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDLFIRGSVVRYV 70
Query: 263 HQLF*YV 283
H YV
Sbjct: 71 HMSSAYV 77
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 2.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 69 SNIDSFLLFSLLSPVTW 19
S +DSFL F L P+TW
Sbjct: 272 SGLDSFLNFPLYWPITW 288
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 3.2
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 365 KIYSYHNNYSYPSWLING 312
+IYS++N YSY + + NG
Sbjct: 226 QIYSFNNGYSYKNSISNG 243
>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 408
Score = 25.0 bits (52), Expect = 4.2
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 32 DNKEKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPL 157
+N K+ + + +++ +E I + + E G+LKGYD L
Sbjct: 353 NNHRKKISQVLRKINRDIEL-ININYGTDSEWRGVLKGYDKL 393
>SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein
Smf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 78
Score = 25.0 bits (52), Expect = 4.2
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFL 193
L + K + V+ G+E G L+ D +NL L N E +
Sbjct: 12 LQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELV 52
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 4.2
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 386 FFFLPY-LKIYSYHNNYSYPSWLINGFGIASIPS 288
FF LP+ + Y N S W I+ F IAS+PS
Sbjct: 293 FFGLPWGAGNHMYINIPSLSYWQIHPFTIASVPS 326
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 24.2 bits (50), Expect = 7.3
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 56 ESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNT 181
E +D + L S K+ G E G+L YD L+ +L+ +
Sbjct: 3696 EEDVDGTMNLHLSSNFKYIGQTEIIGLLDSYDCYLSSLLETS 3737
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 23.8 bits (49), Expect = 9.7
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -2
Query: 350 HNNYSYPSWLINGFGIASIPSIGH 279
H N +YPS + F + S P H
Sbjct: 1092 HPNVTYPSECLQSFALKSSPQKSH 1115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,498,640
Number of Sequences: 5004
Number of extensions: 29103
Number of successful extensions: 96
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -