Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1030
(393 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0523 + 4556309-4556311,4556434-4556515,4557528-4557548,455... 81 3e-16
03_04_0043 + 16747103-16747137,16747237-16747259,16748735-167488... 47 6e-06
07_03_1222 - 24983294-24983356,24983695-24983858,24985209-249852... 35 0.027
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962... 30 0.58
01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297 30 0.76
05_07_0342 + 29402867-29402906,29403012-29403052,29403146-294032... 29 1.3
07_01_0479 + 3606663-3607448 28 3.1
03_06_0641 - 35232858-35232892,35233066-35233290,35233785-352339... 28 3.1
01_05_0122 + 18366119-18367014,18367042-18367397,18367471-18368165 28 3.1
08_01_0433 + 3794440-3794948,3795696-3796707 27 4.1
09_05_0016 + 20089545-20089748,20090072-20090263,20090644-200908... 27 5.4
05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042 27 5.4
05_05_0303 - 23958989-23960563,23962628-23962864,23963250-239634... 27 7.1
03_02_1018 + 13234436-13234729,13235301-13235423 27 7.1
03_02_0191 - 6270591-6271364,6271458-6272168 27 7.1
01_06_0656 - 30926858-30927040,30927141-30927281,30927373-309274... 27 7.1
01_05_0079 - 17944260-17944462,17944742-17945073,17945663-179456... 27 7.1
10_08_0301 - 16619499-16619675,16619770-16619853,16619932-166200... 26 9.4
08_02_0817 + 21516306-21516584,21517515-21517601,21517705-215178... 26 9.4
>08_01_0523 +
4556309-4556311,4556434-4556515,4557528-4557548,
4557824-4557895,4558259-4558311,4558721-4558807
Length = 105
Score = 81.0 bits (191), Expect = 3e-16
Identities = 40/75 (53%), Positives = 52/75 (69%), Gaps = 7/75 (9%)
Frame = +2
Query: 50 RKESILDLSKYLEKSIRVKFAGGREAA-------GILKGYDPLLNLVLDNTTEFLRDPDD 208
RKE++LDL+K+++K ++VK GGR+ + G LKGYD LLNLVLD EF R+ DD
Sbjct: 4 RKETVLDLAKFVDKGVQVKLTGGRQVSFYGQSVTGTLKGYDQLLNLVLDEAVEFEREQDD 63
Query: 209 PYKLLDDTRALGLVV 253
P KL TR LGL+V
Sbjct: 64 PLKLSGKTRQLGLIV 78
Score = 31.9 bits (69), Expect = 0.19
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 208 PIQTFG*HKSFRSCCFRGTSVVLICPMDGMEAIPNPF 318
P++ G + RGT+V+L+ P DG + I NPF
Sbjct: 64 PLKLSGKTRQLGLIVCRGTAVMLVSPTDGTDEIANPF 100
>03_04_0043 +
16747103-16747137,16747237-16747259,16748735-16748856,
16748980-16749042
Length = 80
Score = 46.8 bits (106), Expect = 6e-06
Identities = 18/40 (45%), Positives = 27/40 (67%)
Frame = +2
Query: 68 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
DL KY++K +++K R G L+G+D +NLV+DNT E
Sbjct: 9 DLKKYMDKKLQIKLNANRVIVGTLRGFDQFMNLVVDNTVE 48
>07_03_1222 -
24983294-24983356,24983695-24983858,24985209-24985231,
24985340-24985374
Length = 94
Score = 34.7 bits (76), Expect = 0.027
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 47 RRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
++ ++++ S L + VK R G L+G+D +NLV+DNT E
Sbjct: 16 KKLQTLMVYSFTLFSILPVKLNANRVVIGTLRGFDQFMNLVVDNTVE 62
>05_04_0169 -
18694418-18694453,18694516-18694627,18696095-18696243,
18696980-18697033,18697110-18697222,18697323-18697374
Length = 171
Score = 30.3 bits (65), Expect = 0.58
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEF 190
+ + + I V G +E G L G+D +N+VL++ TE+
Sbjct: 84 IDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEY 123
>01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297
Length = 104
Score = 29.9 bits (64), Expect = 0.76
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 65 LDLSKY-LEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFL 193
LDL + L++ I VK RE G L YD LN++L + E +
Sbjct: 20 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIV 63
>05_07_0342 +
29402867-29402906,29403012-29403052,29403146-29403220,
29403523-29403648,29404195-29404247,29404385-29404475
Length = 141
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
L +++ I V GR G L+G+D N++LD + E
Sbjct: 8 LESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHE 46
>07_01_0479 + 3606663-3607448
Length = 261
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 77 KYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDP 202
+++ +RV GR+ G +D +NLVL + EF + P
Sbjct: 11 QFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLP 52
>03_06_0641 -
35232858-35232892,35233066-35233290,35233785-35233929,
35234295-35234406,35234477-35234535,35234981-35235022,
35235372-35235434,35235636-35235697,35236298-35236451,
35236572-35236651,35237646-35237709,35237791-35237959,
35238002-35238114,35238361-35238507
Length = 489
Score = 27.9 bits (59), Expect = 3.1
Identities = 20/55 (36%), Positives = 25/55 (45%)
Frame = +2
Query: 50 RKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPY 214
R+E D +KY +R+KF +A LKG D L L D FL D Y
Sbjct: 267 RREPTSDPTKYTAADVRIKFMLIMQAIVALKGTDQKLRL-CDICGAFLSVYDKKY 320
>01_05_0122 + 18366119-18367014,18367042-18367397,18367471-18368165
Length = 648
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 14 GSQVTGDNKEKRRKESILDLSKYLEKSIRVKFAGG 118
G V GD+ +K LDL +L +I ++ AGG
Sbjct: 403 GRHVAGDDDDKPTMLGPLDLPSFLSDTISIETAGG 437
>08_01_0433 + 3794440-3794948,3795696-3796707
Length = 506
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -1
Query: 144 PLRIPAASRPPANFTRMLFSKYLLRSNID 58
P RI S+PP + RM+F+ Y LR NID
Sbjct: 152 PRRIKPGSKPPKDLKRMVFN-YTLR-NID 178
>09_05_0016 +
20089545-20089748,20090072-20090263,20090644-20090814,
20090915-20091096,20091189-20091435,20091776-20091908,
20092070-20092599,20092940-20093170
Length = 629
Score = 27.1 bits (57), Expect = 5.4
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +2
Query: 23 VTGDN-KEKRRKESILDLSKYLEKSIR 100
++GD+ K+ RK S +DLSK L KS+R
Sbjct: 597 LSGDSGKDGSRKSSDVDLSKNLPKSVR 623
>05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042
Length = 1211
Score = 27.1 bits (57), Expect = 5.4
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -2
Query: 377 LPYLKIYSYHNNYSYPSWLINGFGIASIPSIGHIKTTDVPRKQQDLKL 234
L +L I Y + +YPSWL+ G + ++ S + + R + KL
Sbjct: 776 LEHLSIRGYKST-TYPSWLLEGSQLENLESFALYNCSALERLPSNTKL 822
>05_05_0303 -
23958989-23960563,23962628-23962864,23963250-23963449,
23964088-23964250,23964348-23964554,23964667-23964798
Length = 837
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 146 YDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGLVVSEVH 265
+DP NL +DN R+P D D+T G S +H
Sbjct: 667 FDPDSNLDIDNDKVCKRNPSDILSCSDETEFPGSAPSVLH 706
>03_02_1018 + 13234436-13234729,13235301-13235423
Length = 138
Score = 26.6 bits (56), Expect = 7.1
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = -2
Query: 305 IASIPSIGHIKTTDVPRKQQDLKLLCHPKVCMGHQ 201
+ + ++GH+ + +DLK CH ++ HQ
Sbjct: 87 VHDLDTLGHLTRAAIALDMEDLKDECHKRMLQDHQ 121
>03_02_0191 - 6270591-6271364,6271458-6272168
Length = 494
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 117 PPANFTRMLFSKYLLRSNIDSFLL 46
P + + M+ +KY LRSNI SF L
Sbjct: 194 PTPSLSAMIINKYKLRSNIRSFNL 217
>01_06_0656 -
30926858-30927040,30927141-30927281,30927373-30927489,
30927696-30927784,30927870-30928010,30928084-30928171,
30928280-30928342,30928544-30928699,30928778-30928870,
30929095-30929176,30929426-30929493,30929575-30930633
Length = 759
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 152 PLLNLVLDNTTEFLRDPDDPYKLLDDT 232
P L+ ++ ++ ++DPDDP + L DT
Sbjct: 474 PQLDQLIKEASKMVQDPDDPSQTLYDT 500
>01_05_0079 -
17944260-17944462,17944742-17945073,17945663-17945691,
17946135-17946208,17946293-17946449,17946653-17946655
Length = 265
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 230 CHPKVCMGHQDLLETP*YCLAQGLEGDHSL*EFPPLHALLRI 105
C K C+ +L P C A+ E ++SL P L A+ I
Sbjct: 7 CFGKACLLSSVMLVLPPSCFAEPCEPEYSLPNMPLLFAIAMI 48
>10_08_0301 -
16619499-16619675,16619770-16619853,16619932-16620083,
16620296-16620391,16620473-16620627,16620791-16620856,
16620993-16621062,16621175-16621305,16622121-16622307,
16622410-16622485
Length = 397
Score = 26.2 bits (55), Expect = 9.4
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = -1
Query: 162 FRRGS*PLRIPAASRPPANFTRMLFSK----YLLRSNIDSFLLFSLLSPVTWLPF 10
F RGS L IP A+ P NF+ +L Y + + + +F ++ + W P+
Sbjct: 249 FGRGSKVLGIPTANLPAENFSDVLSEHTSGVYFGWAGLSTRGIFKMVMSIGWNPY 303
>08_02_0817 +
21516306-21516584,21517515-21517601,21517705-21517848,
21517937-21518029,21518156-21518407
Length = 284
Score = 26.2 bits (55), Expect = 9.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 144 PLRIPAASRPPANFTRMLFSKYLLRSNIDSF--LLFSLLSPV 25
P R+P PP NFT L+S L + D+ + F+ L P+
Sbjct: 107 PFRVPFTLAPPYNFTTELYSAAALVNVNDAIWSMYFNELLPL 148
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,362,841
Number of Sequences: 37544
Number of extensions: 177533
Number of successful extensions: 514
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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