Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1030
         (393 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26035| Best HMM Match : LSM (HMM E-Value=6.1e-13)                   33   0.083
SB_2028| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.14 
SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_48450| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_39423| Best HMM Match : IncA (HMM E-Value=0.55)                     26   9.5  
SB_35067| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  
SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  
SB_27610| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  

>SB_26035| Best HMM Match : LSM (HMM E-Value=6.1e-13)
          Length = 75

 Score = 33.1 bits (72), Expect = 0.083
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 26  TGDNKEKRRKESILDLSKY-LEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
           TG+       E  LDL +  L++ I VK    RE  G L  YD  LN++L +  E
Sbjct: 4   TGEEVAPNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILSDVEE 58


>SB_2028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 681

 Score = 32.3 bits (70), Expect = 0.14
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 41  EKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDP 202
           E  + E   +L  +L K +RVK + GR   G     D   N++L +  EF+  P
Sbjct: 23  ENEKSEQRKELESWLNKLMRVKISDGRTLIGSFLCTDKDRNIILGSCQEFVGTP 76


>SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1418

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 32  DNKEKRRKESILDLSKYLEKSIR--VKFAGGRE 124
           +NK K RKE I+D SK +++ ++  + F  G E
Sbjct: 543 ENKFKNRKEDIVDRSKKVDEGVKKALGFKSGME 575


>SB_48450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 457

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +2

Query: 5   KSKGSQVTGD-NKEKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNT 181
           KSK  + T D +K    KE+ L L KYL  S+ ++   GR     +  YD +    +   
Sbjct: 173 KSKTLEFTADLSKYGDSKETWLALGKYL--SLLMEGLHGRGEP--ISKYDGIGEDEMKYK 228

Query: 182 TEFLRDPDDPYKLLDDT 232
              L  PDDPY L D T
Sbjct: 229 VSNL--PDDPYNLTDGT 243


>SB_39423| Best HMM Match : IncA (HMM E-Value=0.55)
          Length = 425

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 2   EKSKGSQVTGDNKEKRRKESILDLSKYLEKSIRVKFAGGREAAG 133
           EK K  +    N  K +KE+  +     E+ +RVK    R A+G
Sbjct: 369 EKKKQERALPGNPRKDKKEAAKNSRGVRERGVRVKLRFRRHASG 412


>SB_35067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 612

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 155 LLNLVLDNTTEFLRDPDDPYKLLD 226
           + NLVLD TT  L DPD  +  L+
Sbjct: 218 MANLVLDKTTGLLGDPDLNFAALE 241


>SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1266

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 192 RNSVVLSSTRFRRGS*PLRIPAASRPPANFTR 97
           R SV  S+ R R+G+  L +PA  R  AN T+
Sbjct: 528 RVSVTRSALRSRKGNRTLSLPALPRSNANVTQ 559


>SB_27610| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 371 YLKIYSYHNNYSYPSWLINGFGIASIPSIGHIK 273
           Y +  S+H +  YPS++I  F I+  P++  I+
Sbjct: 150 YCERVSFHRDLHYPSFVIVAFIISLRPALSFIR 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,880,838
Number of Sequences: 59808
Number of extensions: 208154
Number of successful extensions: 507
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)