Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1030
(393 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small ... 124 1e-28
AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated Sm-... 124 1e-28
AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated Sm-... 124 1e-28
AC005258-1|AAC25622.1| 145|Homo sapiens R30783_1 protein. 77 3e-14
X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein. 48 8e-06
CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein. 48 8e-06
BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear ribonucle... 48 8e-06
BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear ribonucle... 48 8e-06
BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear ribonucle... 48 8e-06
BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear ribonucle... 48 8e-06
BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear ribonucle... 48 8e-06
BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear ribonucle... 48 8e-06
AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein. 48 8e-06
BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein. 43 4e-04
BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein. 37 0.027
BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small ... 37 0.027
BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small ... 37 0.027
AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated Sm-... 37 0.027
AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1 prot... 37 0.027
BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small ... 33 0.44
AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein. 33 0.44
AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated Sm-... 33 0.44
X90568-1|CAA62188.1|26926|Homo sapiens titin protein. 31 1.0
AJ277892-2|CAD12456.1|30017|Homo sapiens Titin protein. 31 1.0
AJ277892-1|CAD12455.1|26926|Homo sapiens N2B-Titin Isoform protein. 31 1.0
S75989-1|AAB33570.1| 632|Homo sapiens gamma-aminobutyric acid t... 31 1.8
CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein. 30 2.4
BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small ... 30 2.4
AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein. 30 2.4
AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein. 30 2.4
AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated Sm-... 30 2.4
AK127400-1|BAC86960.1| 198|Homo sapiens protein ( Homo sapiens ... 28 9.5
>BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 103
Score = 124 bits (298), Expect = 1e-28
Identities = 56/73 (76%), Positives = 67/73 (91%)
Frame = +2
Query: 35 NKEKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPY 214
+KEK++KESILDLSKY++K+IRVKF GGREA+GILKG+DPLLNLVLD T E++RDPDD Y
Sbjct: 3 DKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQY 62
Query: 215 KLLDDTRALGLVV 253
KL +DTR LGLVV
Sbjct: 63 KLTEDTRQLGLVV 75
Score = 52.0 bits (119), Expect = 7e-07
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = +1
Query: 256 RGTSVVLICPMDGMEAIPNPFINQE 330
RGTSVVLICP DGMEAIPNPFI Q+
Sbjct: 77 RGTSVVLICPQDGMEAIPNPFIQQQ 101
>AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 124 bits (298), Expect = 1e-28
Identities = 56/73 (76%), Positives = 67/73 (91%)
Frame = +2
Query: 35 NKEKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPY 214
+KEK++KESILDLSKY++K+IRVKF GGREA+GILKG+DPLLNLVLD T E++RDPDD Y
Sbjct: 3 DKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQY 62
Query: 215 KLLDDTRALGLVV 253
KL +DTR LGLVV
Sbjct: 63 KLTEDTRQLGLVV 75
Score = 52.0 bits (119), Expect = 7e-07
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = +1
Query: 256 RGTSVVLICPMDGMEAIPNPFINQE 330
RGTSVVLICP DGMEAIPNPFI Q+
Sbjct: 77 RGTSVVLICPQDGMEAIPNPFIQQQ 101
>AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 124 bits (298), Expect = 1e-28
Identities = 56/73 (76%), Positives = 67/73 (91%)
Frame = +2
Query: 35 NKEKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPY 214
+KEK++KESILDLSKY++K+IRVKF GGREA+GILKG+DPLLNLVLD T E++RDPDD Y
Sbjct: 3 DKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQY 62
Query: 215 KLLDDTRALGLVV 253
KL +DTR LGLVV
Sbjct: 63 KLTEDTRQLGLVV 75
Score = 52.0 bits (119), Expect = 7e-07
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = +1
Query: 256 RGTSVVLICPMDGMEAIPNPFINQE 330
RGTSVVLICP DGMEAIPNPFI Q+
Sbjct: 77 RGTSVVLICPQDGMEAIPNPFIQQQ 101
>AC005258-1|AAC25622.1| 145|Homo sapiens R30783_1 protein.
Length = 145
Score = 76.6 bits (180), Expect = 3e-14
Identities = 34/46 (73%), Positives = 39/46 (84%)
Frame = +2
Query: 116 GREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGLVV 253
GR +GILKG+DPLLNLVLD T E++RDPDD YKL +DTR LGLVV
Sbjct: 72 GRPRSGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVV 117
Score = 52.0 bits (119), Expect = 7e-07
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = +1
Query: 256 RGTSVVLICPMDGMEAIPNPFINQE 330
RGTSVVLICP DGMEAIPNPFI Q+
Sbjct: 119 RGTSVVLICPQDGMEAIPNPFIQQQ 143
>X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein.
Length = 76
Score = 48.4 bits (110), Expect = 8e-06
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +2
Query: 68 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
+L K+++K + +K GGR GIL+G+DP +NLV+D E
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE 47
>CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein.
Length = 76
Score = 48.4 bits (110), Expect = 8e-06
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +2
Query: 68 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
+L K+++K + +K GGR GIL+G+DP +NLV+D E
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE 47
>BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 48.4 bits (110), Expect = 8e-06
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +2
Query: 68 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
+L K+++K + +K GGR GIL+G+DP +NLV+D E
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE 47
>BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 48.4 bits (110), Expect = 8e-06
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +2
Query: 68 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
+L K+++K + +K GGR GIL+G+DP +NLV+D E
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE 47
>BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 48.4 bits (110), Expect = 8e-06
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +2
Query: 68 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
+L K+++K + +K GGR GIL+G+DP +NLV+D E
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE 47
>BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 48.4 bits (110), Expect = 8e-06
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +2
Query: 68 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
+L K+++K + +K GGR GIL+G+DP +NLV+D E
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE 47
>BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 48.4 bits (110), Expect = 8e-06
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +2
Query: 68 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
+L K+++K + +K GGR GIL+G+DP +NLV+D E
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE 47
>BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 48.4 bits (110), Expect = 8e-06
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +2
Query: 68 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
+L K+++K + +K GGR GIL+G+DP +NLV+D E
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE 47
>AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein.
Length = 76
Score = 48.4 bits (110), Expect = 8e-06
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +2
Query: 68 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
+L K+++K + +K GGR GIL+G+DP +NLV+D E
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE 47
>BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein.
Length = 64
Score = 42.7 bits (96), Expect = 4e-04
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +2
Query: 83 LEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
++K + +K GGR GIL+G+DP +NLV+D E
Sbjct: 1 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE 35
>BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein.
Length = 67
Score = 36.7 bits (81), Expect = 0.027
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
L Y+ +++ V + GR G LKG+D +NL+LD + E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 36.7 bits (81), Expect = 0.027
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
L Y+ +++ V + GR G LKG+D +NL+LD + E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 36.7 bits (81), Expect = 0.027
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
L Y+ +++ V + GR G LKG+D +NL+LD + E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated
Sm-like protein LSm8 protein.
Length = 96
Score = 36.7 bits (81), Expect = 0.027
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
L Y+ +++ V + GR G LKG+D +NL+LD + E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1
protein.
Length = 96
Score = 36.7 bits (81), Expect = 0.027
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
L Y+ +++ V + GR G LKG+D +NL+LD + E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 91
Score = 32.7 bits (71), Expect = 0.44
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPD 205
+ K + I + +E G L G+D +N+VL++ TEF P+
Sbjct: 18 VDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPE 62
>AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein.
Length = 91
Score = 32.7 bits (71), Expect = 0.44
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPD 205
+ K + I + +E G L G+D +N+VL++ TEF P+
Sbjct: 18 VDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPE 62
>AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated
Sm-like protein LSm5 protein.
Length = 91
Score = 32.7 bits (71), Expect = 0.44
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPD 205
+ K + I + +E G L G+D +N+VL++ TEF P+
Sbjct: 18 VDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPE 62
>X90568-1|CAA62188.1|26926|Homo sapiens titin protein.
Length = 26926
Score = 31.5 bits (68), Expect = 1.0
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +2
Query: 14 GSQVTGDNKEKRRKESILDLSKYLEKSIRVKFAGGRE--AAGILKGYDPLLNLVLDNTTE 187
GS+VTG + EK+ + SI L + + GRE A G+++G D + +N+
Sbjct: 21288 GSEVTGFHVEKKERNSI------LWQKVNTSPISGREYRATGLVEGLDYQFRVYAENSAG 21341
Query: 188 FLRDPDDPYK 217
L P DP K
Sbjct: 21342 -LSSPSDPSK 21350
>AJ277892-2|CAD12456.1|30017|Homo sapiens Titin protein.
Length = 30000
Score = 31.5 bits (68), Expect = 1.0
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +2
Query: 14 GSQVTGDNKEKRRKESILDLSKYLEKSIRVKFAGGRE--AAGILKGYDPLLNLVLDNTTE 187
GS+VTG + EK+ + SI L + + GRE A G+++G D + +N+
Sbjct: 28712 GSEVTGFHVEKKERNSI------LWQKVNTSPISGREYRATGLVEGLDYQFRVYAENSAG 28765
Query: 188 FLRDPDDPYK 217
L P DP K
Sbjct: 28766 -LSSPSDPSK 28774
>AJ277892-1|CAD12455.1|26926|Homo sapiens N2B-Titin Isoform protein.
Length = 26926
Score = 31.5 bits (68), Expect = 1.0
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +2
Query: 14 GSQVTGDNKEKRRKESILDLSKYLEKSIRVKFAGGRE--AAGILKGYDPLLNLVLDNTTE 187
GS+VTG + EK+ + SI L + + GRE A G+++G D + +N+
Sbjct: 21288 GSEVTGFHVEKKERNSI------LWQKVNTSPISGREYRATGLVEGLDYQFRVYAENSAG 21341
Query: 188 FLRDPDDPYK 217
L P DP K
Sbjct: 21342 -LSSPSDPSK 21350
>S75989-1|AAB33570.1| 632|Homo sapiens gamma-aminobutyric acid
transporter type 3 protein.
Length = 632
Score = 30.7 bits (66), Expect = 1.8
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 389 FFFFLPYLKIYSYHNNYSYPSWLINGFGI 303
F FFL K Y+N Y+YP+W G+GI
Sbjct: 528 FIFFLIKYKPLKYNNIYTYPAW---GYGI 553
>CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein.
Length = 102
Score = 30.3 bits (65), Expect = 2.4
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 56 ESILDLSKY-LEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
E LDL + L++ I VK RE G L YD LN++L + E
Sbjct: 15 EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 102
Score = 30.3 bits (65), Expect = 2.4
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 56 ESILDLSKY-LEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
E LDL + L++ I VK RE G L YD LN++L + E
Sbjct: 15 EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein.
Length = 102
Score = 30.3 bits (65), Expect = 2.4
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 56 ESILDLSKY-LEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
E LDL + L++ I VK RE G L YD LN++L + E
Sbjct: 15 EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein.
Length = 102
Score = 30.3 bits (65), Expect = 2.4
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 56 ESILDLSKY-LEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
E LDL + L++ I VK RE G L YD LN++L + E
Sbjct: 15 EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated
Sm-like protein LSm3 protein.
Length = 102
Score = 30.3 bits (65), Expect = 2.4
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 56 ESILDLSKY-LEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
E LDL + L++ I VK RE G L YD LN++L + E
Sbjct: 15 EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>AK127400-1|BAC86960.1| 198|Homo sapiens protein ( Homo sapiens
cDNA FLJ45491 fis, clone BRTHA2006720. ).
Length = 198
Score = 28.3 bits (60), Expect = 9.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 270 CFNMSNGWYGSNTKP 314
CF++S+GWY NT P
Sbjct: 68 CFSLSSGWYYRNTPP 82
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,424,492
Number of Sequences: 237096
Number of extensions: 915776
Number of successful extensions: 5656
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 5624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5656
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2756025120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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