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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1030
         (393 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical pr...    99   1e-21
AF303264-1|AAG50222.1|   77|Caenorhabditis elegans SM protein G ...    51   3e-07
AC024201-5|AAF36015.1|   77|Caenorhabditis elegans Small nuclear...    51   3e-07
AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like ...    37   0.004
Z69302-4|CAA93263.1|  125|Caenorhabditis elegans Hypothetical pr...    30   0.51 
Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AL132948-46|CAD31837.2|  473|Caenorhabditis elegans Hypothetical...    27   4.8  
Z81461-1|CAB03833.1|  944|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U00031-11|AAK18868.1|  194|Caenorhabditis elegans Hypothetical p...    26   8.4  
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    26   8.4  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    26   8.4  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    26   8.4  
AF016448-4|AAY86192.1|   91|Caenorhabditis elegans Hypothetical ...    26   8.4  
AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family ...    26   8.4  
AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family ...    26   8.4  
AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family ...    26   8.4  
AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family ...    26   8.4  
AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family ...    26   8.4  

>Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical
           protein ZK593.7 protein.
          Length = 104

 Score = 98.7 bits (235), Expect = 1e-21
 Identities = 42/71 (59%), Positives = 61/71 (85%)
 Frame = +2

Query: 44  KRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLL 223
           KR+KES++DL+++L+K IRVKF GGREA+G+L+G+D LLN+VLD+  E+LRDP +P  + 
Sbjct: 7   KRKKESVVDLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVG 66

Query: 224 DDTRALGLVVS 256
           D+TR LGL+V+
Sbjct: 67  DETRQLGLIVA 77



 Score = 35.5 bits (78), Expect = 0.014
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 256 RGTSVVLICPMDGMEAIPNPFINQE 330
           RGT++ ++ P DG+E I NPF  QE
Sbjct: 78  RGTAITVVSPADGLEQIANPFATQE 102


>AF303264-1|AAG50222.1|   77|Caenorhabditis elegans SM protein G
           protein.
          Length = 77

 Score = 50.8 bits (116), Expect = 3e-07
 Identities = 18/44 (40%), Positives = 31/44 (70%)
 Frame = +2

Query: 68  DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRD 199
           +L KY++K + +K  G R  +GIL+G+DP +N+V+D   E+ +D
Sbjct: 8   ELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKD 51


>AC024201-5|AAF36015.1|   77|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 7 protein.
          Length = 77

 Score = 50.8 bits (116), Expect = 3e-07
 Identities = 18/44 (40%), Positives = 31/44 (70%)
 Frame = +2

Query: 68  DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRD 199
           +L KY++K + +K  G R  +GIL+G+DP +N+V+D   E+ +D
Sbjct: 8   ELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKD 51


>AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like
           protein protein 8 protein.
          Length = 98

 Score = 37.1 bits (82), Expect = 0.004
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +2

Query: 71  LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
           L  Y+ + + V    GR   G+LKG+D L+NLV+++  E
Sbjct: 5   LDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHE 43


>Z69302-4|CAA93263.1|  125|Caenorhabditis elegans Hypothetical
           protein F40F8.9 protein.
          Length = 125

 Score = 30.3 bits (65), Expect = 0.51
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 65  LDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
           + L + L+K + V    GR+  G L+  D   NL+L++  E
Sbjct: 12  ISLFEQLDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVE 52


>Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical
           protein F28F8.3 protein.
          Length = 91

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 71  LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPD 205
           + K +   I V     +E  G L G+D  +N+VL++  E+    D
Sbjct: 18  IDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTAD 62


>AL132948-46|CAD31837.2|  473|Caenorhabditis elegans Hypothetical
           protein Y39B6A.27 protein.
          Length = 473

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = -3

Query: 145 AFKNSRRFTPSC-EFYTDAFLQVFAKI*YRFFPSLFFIISCYLAAF 11
           +F  +  F PS     T  FL VFA I Y  FP  F   + Y   F
Sbjct: 62  SFMTACLFAPSILNLTTPKFLLVFAGISYALFPMGFLFFNTYFYYF 107


>Z81461-1|CAB03833.1|  944|Caenorhabditis elegans Hypothetical
           protein C04F12.1 protein.
          Length = 944

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -2

Query: 371 YLKIYSYHNNYSYPSWLINGFGIASIPSIGHIKTTD 264
           YLK    H  YS+ S  I+  GI+++P IG IK  D
Sbjct: 332 YLKGLRVHTTYSHQSIFID--GISNVP-IGEIKLPD 364


>U00031-11|AAK18868.1|  194|Caenorhabditis elegans Hypothetical
           protein B0361.9 protein.
          Length = 194

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +2

Query: 14  GSQVTGDNKEKRRKESILDLSKYLEK-SIRVK-FAGG 118
           GS++T    E   +E  LD+SK ++K S +VK F GG
Sbjct: 150 GSEITEKLPEDMAREKKLDMSKLMKKLSAKVKEFNGG 186


>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
           protein.
          Length = 10578

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -1

Query: 141 LRIPAASRPPANFTRMLFSKYLLRSN 64
           LR+ A+S PPA F  ML + + LRSN
Sbjct: 614 LRVMASSLPPATFLWML-NNFELRSN 638


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
           protein.
          Length = 18519

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -1

Query: 141 LRIPAASRPPANFTRMLFSKYLLRSN 64
           LR+ A+S PPA F  ML + + LRSN
Sbjct: 614 LRVMASSLPPATFLWML-NNFELRSN 638


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
           protein.
          Length = 18534

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -1

Query: 141 LRIPAASRPPANFTRMLFSKYLLRSN 64
           LR+ A+S PPA F  ML + + LRSN
Sbjct: 614 LRVMASSLPPATFLWML-NNFELRSN 638


>AF016448-4|AAY86192.1|   91|Caenorhabditis elegans Hypothetical
           protein F41E6.15 protein.
          Length = 91

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 392 FFFFFLPYLKIYSYHNNYSYPSWLING 312
           ++  + PY   Y Y   Y YPS+ + G
Sbjct: 36  YYNLYYPYYSYYPYSYYYYYPSYYVLG 62


>AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family
           protein 1, isoform g protein.
          Length = 1769

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -1

Query: 141 LRIPAASRPPANFTRMLFSKYLLRSN 64
           LR+ A+S PPA F  ML + + LRSN
Sbjct: 614 LRVMASSLPPATFLWML-NNFELRSN 638


>AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family
           protein 1, isoform f protein.
          Length = 1769

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -1

Query: 141 LRIPAASRPPANFTRMLFSKYLLRSN 64
           LR+ A+S PPA F  ML + + LRSN
Sbjct: 614 LRVMASSLPPATFLWML-NNFELRSN 638


>AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family
           protein 1, isoform e protein.
          Length = 1769

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -1

Query: 141 LRIPAASRPPANFTRMLFSKYLLRSN 64
           LR+ A+S PPA F  ML + + LRSN
Sbjct: 614 LRVMASSLPPATFLWML-NNFELRSN 638


>AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family
           protein 1, isoform d protein.
          Length = 1769

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -1

Query: 141 LRIPAASRPPANFTRMLFSKYLLRSN 64
           LR+ A+S PPA F  ML + + LRSN
Sbjct: 614 LRVMASSLPPATFLWML-NNFELRSN 638


>AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family
           protein 1, isoform c protein.
          Length = 1769

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -1

Query: 141 LRIPAASRPPANFTRMLFSKYLLRSN 64
           LR+ A+S PPA F  ML + + LRSN
Sbjct: 614 LRVMASSLPPATFLWML-NNFELRSN 638


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,075,849
Number of Sequences: 27780
Number of extensions: 152042
Number of successful extensions: 441
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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