BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1030 (393 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical pr... 99 1e-21 AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G ... 51 3e-07 AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear... 51 3e-07 AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like ... 37 0.004 Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical pr... 30 0.51 Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical pr... 29 1.6 AL132948-46|CAD31837.2| 473|Caenorhabditis elegans Hypothetical... 27 4.8 Z81461-1|CAB03833.1| 944|Caenorhabditis elegans Hypothetical pr... 27 6.3 U00031-11|AAK18868.1| 194|Caenorhabditis elegans Hypothetical p... 26 8.4 AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 26 8.4 AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 26 8.4 AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 26 8.4 AF016448-4|AAY86192.1| 91|Caenorhabditis elegans Hypothetical ... 26 8.4 AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family ... 26 8.4 AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family ... 26 8.4 AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family ... 26 8.4 AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family ... 26 8.4 AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family ... 26 8.4 >Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical protein ZK593.7 protein. Length = 104 Score = 98.7 bits (235), Expect = 1e-21 Identities = 42/71 (59%), Positives = 61/71 (85%) Frame = +2 Query: 44 KRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLL 223 KR+KES++DL+++L+K IRVKF GGREA+G+L+G+D LLN+VLD+ E+LRDP +P + Sbjct: 7 KRKKESVVDLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVG 66 Query: 224 DDTRALGLVVS 256 D+TR LGL+V+ Sbjct: 67 DETRQLGLIVA 77 Score = 35.5 bits (78), Expect = 0.014 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = +1 Query: 256 RGTSVVLICPMDGMEAIPNPFINQE 330 RGT++ ++ P DG+E I NPF QE Sbjct: 78 RGTAITVVSPADGLEQIANPFATQE 102 >AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G protein. Length = 77 Score = 50.8 bits (116), Expect = 3e-07 Identities = 18/44 (40%), Positives = 31/44 (70%) Frame = +2 Query: 68 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRD 199 +L KY++K + +K G R +GIL+G+DP +N+V+D E+ +D Sbjct: 8 ELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKD 51 >AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear ribonucleoproteinprotein 7 protein. Length = 77 Score = 50.8 bits (116), Expect = 3e-07 Identities = 18/44 (40%), Positives = 31/44 (70%) Frame = +2 Query: 68 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRD 199 +L KY++K + +K G R +GIL+G+DP +N+V+D E+ +D Sbjct: 8 ELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKD 51 >AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like protein protein 8 protein. Length = 98 Score = 37.1 bits (82), Expect = 0.004 Identities = 15/39 (38%), Positives = 24/39 (61%) Frame = +2 Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187 L Y+ + + V GR G+LKG+D L+NLV+++ E Sbjct: 5 LDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHE 43 >Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical protein F40F8.9 protein. Length = 125 Score = 30.3 bits (65), Expect = 0.51 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = +2 Query: 65 LDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187 + L + L+K + V GR+ G L+ D NL+L++ E Sbjct: 12 ISLFEQLDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVE 52 >Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical protein F28F8.3 protein. Length = 91 Score = 28.7 bits (61), Expect = 1.6 Identities = 13/45 (28%), Positives = 22/45 (48%) Frame = +2 Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPD 205 + K + I V +E G L G+D +N+VL++ E+ D Sbjct: 18 IDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTAD 62 >AL132948-46|CAD31837.2| 473|Caenorhabditis elegans Hypothetical protein Y39B6A.27 protein. Length = 473 Score = 27.1 bits (57), Expect = 4.8 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%) Frame = -3 Query: 145 AFKNSRRFTPSC-EFYTDAFLQVFAKI*YRFFPSLFFIISCYLAAF 11 +F + F PS T FL VFA I Y FP F + Y F Sbjct: 62 SFMTACLFAPSILNLTTPKFLLVFAGISYALFPMGFLFFNTYFYYF 107 >Z81461-1|CAB03833.1| 944|Caenorhabditis elegans Hypothetical protein C04F12.1 protein. Length = 944 Score = 26.6 bits (56), Expect = 6.3 Identities = 16/36 (44%), Positives = 21/36 (58%) Frame = -2 Query: 371 YLKIYSYHNNYSYPSWLINGFGIASIPSIGHIKTTD 264 YLK H YS+ S I+ GI+++P IG IK D Sbjct: 332 YLKGLRVHTTYSHQSIFID--GISNVP-IGEIKLPD 364 >U00031-11|AAK18868.1| 194|Caenorhabditis elegans Hypothetical protein B0361.9 protein. Length = 194 Score = 26.2 bits (55), Expect = 8.4 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%) Frame = +2 Query: 14 GSQVTGDNKEKRRKESILDLSKYLEK-SIRVK-FAGG 118 GS++T E +E LD+SK ++K S +VK F GG Sbjct: 150 GSEITEKLPEDMAREKKLDMSKLMKKLSAKVKEFNGG 186 >AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein protein. Length = 10578 Score = 26.2 bits (55), Expect = 8.4 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = -1 Query: 141 LRIPAASRPPANFTRMLFSKYLLRSN 64 LR+ A+S PPA F ML + + LRSN Sbjct: 614 LRVMASSLPPATFLWML-NNFELRSN 638 >AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein protein. Length = 18519 Score = 26.2 bits (55), Expect = 8.4 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = -1 Query: 141 LRIPAASRPPANFTRMLFSKYLLRSN 64 LR+ A+S PPA F ML + + LRSN Sbjct: 614 LRVMASSLPPATFLWML-NNFELRSN 638 >AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein protein. Length = 18534 Score = 26.2 bits (55), Expect = 8.4 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = -1 Query: 141 LRIPAASRPPANFTRMLFSKYLLRSN 64 LR+ A+S PPA F ML + + LRSN Sbjct: 614 LRVMASSLPPATFLWML-NNFELRSN 638 >AF016448-4|AAY86192.1| 91|Caenorhabditis elegans Hypothetical protein F41E6.15 protein. Length = 91 Score = 26.2 bits (55), Expect = 8.4 Identities = 9/27 (33%), Positives = 14/27 (51%) Frame = -2 Query: 392 FFFFFLPYLKIYSYHNNYSYPSWLING 312 ++ + PY Y Y Y YPS+ + G Sbjct: 36 YYNLYYPYYSYYPYSYYYYYPSYYVLG 62 >AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family protein 1, isoform g protein. Length = 1769 Score = 26.2 bits (55), Expect = 8.4 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = -1 Query: 141 LRIPAASRPPANFTRMLFSKYLLRSN 64 LR+ A+S PPA F ML + + LRSN Sbjct: 614 LRVMASSLPPATFLWML-NNFELRSN 638 >AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family protein 1, isoform f protein. Length = 1769 Score = 26.2 bits (55), Expect = 8.4 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = -1 Query: 141 LRIPAASRPPANFTRMLFSKYLLRSN 64 LR+ A+S PPA F ML + + LRSN Sbjct: 614 LRVMASSLPPATFLWML-NNFELRSN 638 >AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family protein 1, isoform e protein. Length = 1769 Score = 26.2 bits (55), Expect = 8.4 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = -1 Query: 141 LRIPAASRPPANFTRMLFSKYLLRSN 64 LR+ A+S PPA F ML + + LRSN Sbjct: 614 LRVMASSLPPATFLWML-NNFELRSN 638 >AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family protein 1, isoform d protein. Length = 1769 Score = 26.2 bits (55), Expect = 8.4 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = -1 Query: 141 LRIPAASRPPANFTRMLFSKYLLRSN 64 LR+ A+S PPA F ML + + LRSN Sbjct: 614 LRVMASSLPPATFLWML-NNFELRSN 638 >AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family protein 1, isoform c protein. Length = 1769 Score = 26.2 bits (55), Expect = 8.4 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = -1 Query: 141 LRIPAASRPPANFTRMLFSKYLLRSN 64 LR+ A+S PPA F ML + + LRSN Sbjct: 614 LRVMASSLPPATFLWML-NNFELRSN 638 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,075,849 Number of Sequences: 27780 Number of extensions: 152042 Number of successful extensions: 441 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 435 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 441 length of database: 12,740,198 effective HSP length: 74 effective length of database: 10,684,478 effective search space used: 598330768 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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