Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1030
(393 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical pr... 99 1e-21
AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G ... 51 3e-07
AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear... 51 3e-07
AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like ... 37 0.004
Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical pr... 30 0.51
Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical pr... 29 1.6
AL132948-46|CAD31837.2| 473|Caenorhabditis elegans Hypothetical... 27 4.8
Z81461-1|CAB03833.1| 944|Caenorhabditis elegans Hypothetical pr... 27 6.3
U00031-11|AAK18868.1| 194|Caenorhabditis elegans Hypothetical p... 26 8.4
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 26 8.4
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 26 8.4
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 26 8.4
AF016448-4|AAY86192.1| 91|Caenorhabditis elegans Hypothetical ... 26 8.4
AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family ... 26 8.4
AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family ... 26 8.4
AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family ... 26 8.4
AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family ... 26 8.4
AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family ... 26 8.4
>Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical
protein ZK593.7 protein.
Length = 104
Score = 98.7 bits (235), Expect = 1e-21
Identities = 42/71 (59%), Positives = 61/71 (85%)
Frame = +2
Query: 44 KRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLL 223
KR+KES++DL+++L+K IRVKF GGREA+G+L+G+D LLN+VLD+ E+LRDP +P +
Sbjct: 7 KRKKESVVDLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVG 66
Query: 224 DDTRALGLVVS 256
D+TR LGL+V+
Sbjct: 67 DETRQLGLIVA 77
Score = 35.5 bits (78), Expect = 0.014
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 256 RGTSVVLICPMDGMEAIPNPFINQE 330
RGT++ ++ P DG+E I NPF QE
Sbjct: 78 RGTAITVVSPADGLEQIANPFATQE 102
>AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G
protein.
Length = 77
Score = 50.8 bits (116), Expect = 3e-07
Identities = 18/44 (40%), Positives = 31/44 (70%)
Frame = +2
Query: 68 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRD 199
+L KY++K + +K G R +GIL+G+DP +N+V+D E+ +D
Sbjct: 8 ELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKD 51
>AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 7 protein.
Length = 77
Score = 50.8 bits (116), Expect = 3e-07
Identities = 18/44 (40%), Positives = 31/44 (70%)
Frame = +2
Query: 68 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRD 199
+L KY++K + +K G R +GIL+G+DP +N+V+D E+ +D
Sbjct: 8 ELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKD 51
>AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like
protein protein 8 protein.
Length = 98
Score = 37.1 bits (82), Expect = 0.004
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
L Y+ + + V GR G+LKG+D L+NLV+++ E
Sbjct: 5 LDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHE 43
>Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical
protein F40F8.9 protein.
Length = 125
Score = 30.3 bits (65), Expect = 0.51
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 65 LDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
+ L + L+K + V GR+ G L+ D NL+L++ E
Sbjct: 12 ISLFEQLDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVE 52
>Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical
protein F28F8.3 protein.
Length = 91
Score = 28.7 bits (61), Expect = 1.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPD 205
+ K + I V +E G L G+D +N+VL++ E+ D
Sbjct: 18 IDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTAD 62
>AL132948-46|CAD31837.2| 473|Caenorhabditis elegans Hypothetical
protein Y39B6A.27 protein.
Length = 473
Score = 27.1 bits (57), Expect = 4.8
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -3
Query: 145 AFKNSRRFTPSC-EFYTDAFLQVFAKI*YRFFPSLFFIISCYLAAF 11
+F + F PS T FL VFA I Y FP F + Y F
Sbjct: 62 SFMTACLFAPSILNLTTPKFLLVFAGISYALFPMGFLFFNTYFYYF 107
>Z81461-1|CAB03833.1| 944|Caenorhabditis elegans Hypothetical
protein C04F12.1 protein.
Length = 944
Score = 26.6 bits (56), Expect = 6.3
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -2
Query: 371 YLKIYSYHNNYSYPSWLINGFGIASIPSIGHIKTTD 264
YLK H YS+ S I+ GI+++P IG IK D
Sbjct: 332 YLKGLRVHTTYSHQSIFID--GISNVP-IGEIKLPD 364
>U00031-11|AAK18868.1| 194|Caenorhabditis elegans Hypothetical
protein B0361.9 protein.
Length = 194
Score = 26.2 bits (55), Expect = 8.4
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +2
Query: 14 GSQVTGDNKEKRRKESILDLSKYLEK-SIRVK-FAGG 118
GS++T E +E LD+SK ++K S +VK F GG
Sbjct: 150 GSEITEKLPEDMAREKKLDMSKLMKKLSAKVKEFNGG 186
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -1
Query: 141 LRIPAASRPPANFTRMLFSKYLLRSN 64
LR+ A+S PPA F ML + + LRSN
Sbjct: 614 LRVMASSLPPATFLWML-NNFELRSN 638
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -1
Query: 141 LRIPAASRPPANFTRMLFSKYLLRSN 64
LR+ A+S PPA F ML + + LRSN
Sbjct: 614 LRVMASSLPPATFLWML-NNFELRSN 638
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -1
Query: 141 LRIPAASRPPANFTRMLFSKYLLRSN 64
LR+ A+S PPA F ML + + LRSN
Sbjct: 614 LRVMASSLPPATFLWML-NNFELRSN 638
>AF016448-4|AAY86192.1| 91|Caenorhabditis elegans Hypothetical
protein F41E6.15 protein.
Length = 91
Score = 26.2 bits (55), Expect = 8.4
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -2
Query: 392 FFFFFLPYLKIYSYHNNYSYPSWLING 312
++ + PY Y Y Y YPS+ + G
Sbjct: 36 YYNLYYPYYSYYPYSYYYYYPSYYVLG 62
>AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform g protein.
Length = 1769
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -1
Query: 141 LRIPAASRPPANFTRMLFSKYLLRSN 64
LR+ A+S PPA F ML + + LRSN
Sbjct: 614 LRVMASSLPPATFLWML-NNFELRSN 638
>AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform f protein.
Length = 1769
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -1
Query: 141 LRIPAASRPPANFTRMLFSKYLLRSN 64
LR+ A+S PPA F ML + + LRSN
Sbjct: 614 LRVMASSLPPATFLWML-NNFELRSN 638
>AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform e protein.
Length = 1769
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -1
Query: 141 LRIPAASRPPANFTRMLFSKYLLRSN 64
LR+ A+S PPA F ML + + LRSN
Sbjct: 614 LRVMASSLPPATFLWML-NNFELRSN 638
>AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform d protein.
Length = 1769
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -1
Query: 141 LRIPAASRPPANFTRMLFSKYLLRSN 64
LR+ A+S PPA F ML + + LRSN
Sbjct: 614 LRVMASSLPPATFLWML-NNFELRSN 638
>AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform c protein.
Length = 1769
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -1
Query: 141 LRIPAASRPPANFTRMLFSKYLLRSN 64
LR+ A+S PPA F ML + + LRSN
Sbjct: 614 LRVMASSLPPATFLWML-NNFELRSN 638
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,075,849
Number of Sequences: 27780
Number of extensions: 152042
Number of successful extensions: 441
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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