Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1030
         (393 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    27   0.077
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   0.95 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   1.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   6.7  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    20   8.8  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 27.1 bits (57), Expect = 0.077
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 95  IRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKL 220
           +RV       AA  + G+ P LN+V D+  E +R     YK+
Sbjct: 159 LRVALTSELTAASTVLGFFPALNIVADSFIELIRRQRVGYKV 200


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 0.95
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 59  SILDLSKYLEKSIRVKFAGGRE 124
           S++ +S+Y EKS R+ +  GRE
Sbjct: 717 SLVIVSRYAEKSRRMLYLRGRE 738


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 320 INGFGIASIPSIGHIKTTDVPRKQQDLKLLCHPKVCMGHQDLL 192
           +NG+G +S       K    PR+Q++L L+C  +    H + L
Sbjct: 161 LNGYG-SSDGCDARKKKGPTPRQQEELCLVCGDRASGYHYNAL 202


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
          acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 23 VTGDNKEKRRKESILDLSKYLEKSI 97
          V G + EKR    +LD    LE+ +
Sbjct: 18 VNGGSHEKRLLNDLLDTYNVLERPV 42


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 108 NFTRMLFSKY 79
           NF ++LFSKY
Sbjct: 366 NFQQLLFSKY 375


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,604
Number of Sequences: 438
Number of extensions: 1886
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)