Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1030
(393 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putati... 94 3e-20
At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putati... 94 3e-20
At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G, puta... 47 4e-06
At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G, puta... 47 4e-06
At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putati... 36 0.013
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 33 0.069
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 33 0.069
At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putati... 33 0.091
At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putati... 31 0.21
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 31 0.28
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 31 0.28
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 28 2.6
At3g01490.1 68416.m00073 protein kinase, putative similar to ATM... 28 2.6
At2g17430.1 68415.m02011 seven transmembrane MLO family protein ... 27 6.0
At1g68530.2 68414.m07829 very-long-chain fatty acid condensing e... 27 6.0
At1g68530.1 68414.m07828 very-long-chain fatty acid condensing e... 27 6.0
At4g38190.1 68417.m05391 cellulose synthase family protein simil... 26 7.9
At1g11310.1 68414.m01299 seven transmembrane MLO family protein ... 26 7.9
>At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm7 [Homo sapiens]
SWISS-PROT:Q9UK45
Length = 99
Score = 94.3 bits (224), Expect = 3e-20
Identities = 41/68 (60%), Positives = 52/68 (76%)
Frame = +2
Query: 50 RKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDD 229
RKE++LDL+K+++K ++VK GGR+ G LKGYD LLNLVLD EF+RD DDP K D
Sbjct: 4 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQ 63
Query: 230 TRALGLVV 253
TR LGL+V
Sbjct: 64 TRRLGLIV 71
Score = 35.5 bits (78), Expect = 0.013
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +1
Query: 256 RGTSVVLICPMDGMEAIPNPFINQE 330
RGT+V+L+ P DG E I NPF+ E
Sbjct: 73 RGTAVMLVSPTDGTEEIANPFVTAE 97
>At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm7 [Homo sapiens]
SWISS-PROT:Q9UK45
Length = 99
Score = 94.3 bits (224), Expect = 3e-20
Identities = 41/68 (60%), Positives = 52/68 (76%)
Frame = +2
Query: 50 RKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDD 229
RKE++LDL+K+++K ++VK GGR+ G LKGYD LLNLVLD EF+RD DDP K D
Sbjct: 4 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQ 63
Query: 230 TRALGLVV 253
TR LGL+V
Sbjct: 64 TRRLGLIV 71
Score = 35.5 bits (78), Expect = 0.013
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +1
Query: 256 RGTSVVLICPMDGMEAIPNPFINQE 330
RGT+V+L+ P DG E I NPF+ E
Sbjct: 73 RGTAVMLVSPTDGTEEIANPFVTAE 97
>At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to SWISS-PROT:Q15357 small nuclear
ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG)
[Homo sapiens]
Length = 79
Score = 47.2 bits (107), Expect = 4e-06
Identities = 18/40 (45%), Positives = 27/40 (67%)
Frame = +2
Query: 68 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
DL KY++K +++K R G L+G+D +NLV+DNT E
Sbjct: 9 DLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVE 48
>At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to small nuclear ribonucleoprotein G (snRNP-G,
Sm protein G, Sm-G, SmG) [Homo sapiens]
SWISS-PROT:Q15357
Length = 80
Score = 47.2 bits (107), Expect = 4e-06
Identities = 18/40 (45%), Positives = 27/40 (67%)
Frame = +2
Query: 68 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
DL KY++K +++K R G L+G+D +NLV+DNT E
Sbjct: 9 DLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE 48
>At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm5 [Homo sapiens]
SWISS-PROT:Q9Y4Y9
Length = 88
Score = 35.5 bits (78), Expect = 0.013
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEF 190
+ + + I V G +E GILKG+D +N+VL++ TE+
Sbjct: 14 IDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEY 53
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 33.1 bits (72), Expect = 0.069
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +2
Query: 77 KYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLL----DDTRALG 244
+++ +RV GR+ G +D +NLVL + EF + P K + +D R LG
Sbjct: 11 QFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEEREDRRTLG 70
Query: 245 LVV 253
LV+
Sbjct: 71 LVL 73
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 33.1 bits (72), Expect = 0.069
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +2
Query: 77 KYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLL----DDTRALG 244
+++ +RV GR+ G +D +NLVL + EF + P K + +D R LG
Sbjct: 11 QFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEEREDRRTLG 70
Query: 245 LVV 253
LV+
Sbjct: 71 LVL 73
>At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116
Length = 128
Score = 32.7 bits (71), Expect = 0.091
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
L+ YL+K + V GR+ G+L+ +D N VL+ E
Sbjct: 15 LAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYE 53
>At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm8 [Homo sapiens]
SWISS-PROT:O95777
Length = 98
Score = 31.5 bits (68), Expect = 0.21
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
L +++ I V GR G+LKG+D N++LD + E
Sbjct: 7 LETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHE 45
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 31.1 bits (67), Expect = 0.28
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
L+ YL++ + V GR+ G L+ +D N VL+ E
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACE 53
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 31.1 bits (67), Expect = 0.28
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 71 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 187
L+ YL++ + V GR+ G L+ +D N VL+ E
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACE 53
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 77 KYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDP 202
+++ +RV GR+ G +D +NLVL + EF + P
Sbjct: 11 QFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLP 52
>At3g01490.1 68416.m00073 protein kinase, putative similar to ATMRK1
[Arabidopsis thaliana] gi|2351097|dbj|BAA22079
Length = 411
Score = 27.9 bits (59), Expect = 2.6
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 8 SKGSQVTGDNKEKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLV 169
SK + EK R+E +D SK + KS+ + G GI G D + L+
Sbjct: 84 SKNDIIRSTEVEKSRREWEIDPSKLIIKSVIARGTFGTVHRGIYDGQDVAVKLL 137
>At2g17430.1 68415.m02011 seven transmembrane MLO family protein /
MLO-like protein 7 (MLO7) identical to membrane protein
Mlo7 [Arabidopsis thaliana] gi|14091584|gb|AAK53800;
similar to MLO protein SWISS-PROT:P93766,
NCBI_gi:1877221 [Hordeum vulgare][Barley]
Length = 542
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 90 FSKYLLRSNIDSFLLFSLLSPVTWLPF 10
F +Y+ RS D F L +SPV W F
Sbjct: 275 FQRYIKRSLEDDFKLVVGISPVLWASF 301
>At1g68530.2 68414.m07829 very-long-chain fatty acid condensing
enzyme (CUT1) identical to very-long-chain fatty acid
condensing enzyme (CUT1) GB:AF129511 (required for
cuticular wax biosynthesis and pollen fertility:
Millar,A.A., et al., Plant Cell (1999))
Length = 377
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 117 PPANFTRMLFSKYLLRSNIDSFLL 46
P + + M+ +KY LRSNI SF L
Sbjct: 197 PTPSLSAMVINKYKLRSNIKSFNL 220
>At1g68530.1 68414.m07828 very-long-chain fatty acid condensing
enzyme (CUT1) identical to very-long-chain fatty acid
condensing enzyme (CUT1) GB:AF129511 (required for
cuticular wax biosynthesis and pollen fertility:
Millar,A.A., et al., Plant Cell (1999))
Length = 497
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 117 PPANFTRMLFSKYLLRSNIDSFLL 46
P + + M+ +KY LRSNI SF L
Sbjct: 197 PTPSLSAMVINKYKLRSNIKSFNL 220
>At4g38190.1 68417.m05391 cellulose synthase family protein similar
to cellulose synthase catalytic subunit gi:2827143 from
[Arabidopsis thaliana], cellulose synthase-5
(gi:9622882) from Zea mays
Length = 1111
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -3
Query: 91 FLQVFAKI*YRFFP--SLFFIISCYLAAF*LF 2
FLQ A + +P SLF I+ C+L AF LF
Sbjct: 874 FLQRLAYLNVGIYPFTSLFLILYCFLPAFSLF 905
>At1g11310.1 68414.m01299 seven transmembrane MLO family protein /
MLO-like protein 2 (MLO2) idenctical to membrane protein
Mlo2 [Arabidopsis thaliana] gi|14091574|gb|AAK53795;
similar to Mlo [Hordeum vulgare subsp. vulgare]
gi|1877221|emb|CAB06083 SWISS-PROT:P93766
Length = 573
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 114 PANFTRMLFSKYLLRSNIDSFLLFSLLSPVTW 19
P N +R F KY+ RS F +SPV W
Sbjct: 268 PGNESRFDFRKYIQRSLEKDFKTVVEISPVIW 299
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,712,469
Number of Sequences: 28952
Number of extensions: 146886
Number of successful extensions: 456
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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