Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1028
         (299 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q381I5 Cluster: Putative uncharacterized protein; n=1; ...    34   0.54 
UniRef50_A3CRH0 Cluster: Putative uncharacterized protein; n=1; ...    33   1.7  
UniRef50_Q5KEF6 Cluster: Cytoplasm protein, putative; n=2; Filob...    32   2.9  
UniRef50_A7LBJ7 Cluster: Voltage-gated calcium channel alpha2-de...    31   3.8  
UniRef50_UPI0001560AF4 Cluster: PREDICTED: similar to podocalyxi...    31   6.7  
UniRef50_A3Y6G2 Cluster: Integral membrane protein, PqiA family ...    31   6.7  
UniRef50_Q2TJF5 Cluster: Laminin alpha 4; n=9; Clupeocephala|Rep...    30   8.9  
UniRef50_Q7X0L8 Cluster: TadA; n=15; Gammaproteobacteria|Rep: Ta...    30   8.9  
UniRef50_A6GID1 Cluster: Putative membrane attached peptidase; n...    30   8.9  
UniRef50_Q00174 Cluster: Laminin subunit alpha precursor; n=7; D...    30   8.9  

>UniRef50_Q381I5 Cluster: Putative uncharacterized protein; n=1;
            Trypanosoma brucei|Rep: Putative uncharacterized protein
            - Trypanosoma brucei
          Length = 1213

 Score = 34.3 bits (75), Expect = 0.54
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = +3

Query: 24   EKHLIRLRRQITSASHRGISTAIEPVLLRARLRGDQFIPGFCGVTCQ 164
            E H++ LRR ++  S  G+ TAI   LLR RL G+  +PG   +T +
Sbjct: 993  ETHVVGLRRLLSVVSVTGLFTAI---LLRFRLGGEALLPGAVPITSE 1036


>UniRef50_A3CRH0 Cluster: Putative uncharacterized protein; n=1;
           Methanoculleus marisnigri JR1|Rep: Putative
           uncharacterized protein - Methanoculleus marisnigri
           (strain ATCC 35101 / DSM 1498 / JR1)
          Length = 223

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 66  SHRGISTAIEPVLLRARLRGDQFIPGFCGV--TCQR*LGT 179
           +HRG     EP L +AR R +   P FCG   TC   +GT
Sbjct: 83  NHRGSPEKKEPALRQARKRAEAVQPAFCGTHGTCGAAIGT 122


>UniRef50_Q5KEF6 Cluster: Cytoplasm protein, putative; n=2;
           Filobasidiella neoformans|Rep: Cytoplasm protein,
           putative - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 844

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = -1

Query: 200 RWXPTTXGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTP 45
           RW P   G+++ LT  S  P     SS +GP   R  G   +T +G  Y TP
Sbjct: 654 RWVPGAGGSRAQLTSESAFPTLGAASSSAGPS--RAAGSSSSTSSG-AYATP 702


>UniRef50_A7LBJ7 Cluster: Voltage-gated calcium channel alpha2-delta
           subunit 1; n=1; Anopheles gambiae|Rep: Voltage-gated
           calcium channel alpha2-delta subunit 1 - Anopheles
           gambiae (African malaria mosquito)
          Length = 1256

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 197 WXPTTXGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMA 66
           W P   G +S + G  +E R KL+++ S P    FD R ++T A
Sbjct: 466 WSPVFMGGRSGILGRESENRRKLVTTVSTPV---FDRRNHSTRA 506


>UniRef50_UPI0001560AF4 Cluster: PREDICTED: similar to
           podocalyxin-like protein 1; n=2; Laurasiatheria|Rep:
           PREDICTED: similar to podocalyxin-like protein 1 - Equus
           caballus
          Length = 662

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -1

Query: 260 VMTSGTAPNLXRIRXGSPLXRWXPTTXGTKSSLTGNSTEPRDK--LISSQSGPQE 102
           V TS T P L  +   +P     PTT    S L GNS+E  DK  + S+ +G  E
Sbjct: 306 VTTSHTTPALPALT--APTSTHQPTTGSVASKLPGNSSEGPDKTTVASNSAGTME 358


>UniRef50_A3Y6G2 Cluster: Integral membrane protein, PqiA family
           protein; n=1; Marinomonas sp. MED121|Rep: Integral
           membrane protein, PqiA family protein - Marinomonas sp.
           MED121
          Length = 216

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 213 PSXDPGQVRSCPRCHHYIXESVLNADHHV 299
           P  + GQ  SCPRC+H +    L A + +
Sbjct: 33  PELEFGQTASCPRCNHLLTRRFLGAHNRI 61


>UniRef50_Q2TJF5 Cluster: Laminin alpha 4; n=9; Clupeocephala|Rep:
            Laminin alpha 4 - Danio rerio (Zebrafish) (Brachydanio
            rerio)
          Length = 1871

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 173  KSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYA 75
            K  +  ++  PR KL  SQS    Y FDG GYA
Sbjct: 1081 KMDVKASAPCPRHKLAFSQSRVTSYLFDGTGYA 1113


>UniRef50_Q7X0L8 Cluster: TadA; n=15; Gammaproteobacteria|Rep: TadA
           - Actinobacillus actinomycetemcomitans
           (Haemophilusactinomycetemcomitans)
          Length = 426

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 21  EEKHLIRLRRQITSASHRGISTAIEPVLLRARLRGDQFIPGFC 149
           E+ H++RL  ++    H G  T  + V+   R+R ++ I G C
Sbjct: 239 EQPHVVRLETRLAGVEHTGEVTMQDLVINALRMRPERIIVGEC 281


>UniRef50_A6GID1 Cluster: Putative membrane attached peptidase; n=3;
           Bacteria|Rep: Putative membrane attached peptidase -
           Plesiocystis pacifica SIR-1
          Length = 703

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 19/68 (27%), Positives = 27/68 (39%)
 Frame = -1

Query: 293 VIGIQNGFXYVVMTSGTAPNLXRIRXGSPLXRWXPTTXGTKSSLTGNSTEPRDKLISSQS 114
           V+G+      VV+ +G A     I    P   W     G+KS   GN  E  +   S   
Sbjct: 391 VVGVSAKVITVVVEAGDAAPSTPIGINLPNANWIRAQHGSKSVNLGNIVEAYEHAKSGNG 450

Query: 113 GPQEYRFD 90
             +E+ FD
Sbjct: 451 QLEEFTFD 458


>UniRef50_Q00174 Cluster: Laminin subunit alpha precursor; n=7;
            Diptera|Rep: Laminin subunit alpha precursor - Drosophila
            melanogaster (Fruit fly)
          Length = 3712

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 270  PVCSDDIGDSSEPXQDPXRVSIXKMVXXNRWYQVIVDR 157
            P+ + D+G+       P R++  K V   RWYQ +VDR
Sbjct: 2739 PILTIDLGNG------PERITSDKYVADGRWYQAVVDR 2770


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 287,979,993
Number of Sequences: 1657284
Number of extensions: 4817200
Number of successful extensions: 13500
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13489
length of database: 575,637,011
effective HSP length: 76
effective length of database: 449,683,427
effective search space used: 10342718821
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)