Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1028
         (299 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    27   0.78 
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    26   1.4  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    24   5.5  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    24   5.5  
SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|c...    23   7.3  
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po...    23   7.3  
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo...    23   7.3  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    23   7.3  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    23   9.6  
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po...    23   9.6  

>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.6 bits (56), Expect = 0.78
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 187 QPXVPSHR*QVTPQNPGIN*SPRSLALKSTGSMAVDMPRWLAEV 56
           Q   PS R +V PQ PG++ +P SL    + ++        +EV
Sbjct: 109 QMSTPSRRREVDPQRPGVS-TPSSLLFSGSDALTFSQAHPSSEV 151


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 132 IDLLAVWPSRVQVRWPWICHDG 67
           +DLL   PS  Q  W WI H G
Sbjct: 283 LDLLLHPPSSAQKNWSWIKHVG 304


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 210 RPSXDPGQVRSCPRCHHYIXESVLNA 287
           RPS D G+V +C +C+  +    +NA
Sbjct: 56  RPSFDIGKVFACIKCNVKVSLDEINA 81


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +2

Query: 101 TLEGQTARRSIYPWVLWSYLSTMTWYXRLXXTILXMETLXGSWXGSELSPMSSL 262
           TL+     ++++   +  YLS   W   L  T+  M+T       SEL+ + +L
Sbjct: 93  TLDDYVRIKTLFDLAVQDYLSIKIWCMYLEFTLNLMDTSSFEQEQSELNGVITL 146


>SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -1

Query: 125 SSQSGPQEYRFDGRGYATM-AGRGYLTPQSN 36
           S+QSGP+EY    RG   +  G    TP  N
Sbjct: 159 SNQSGPKEYALRLRGLILVPTGDSLYTPIEN 189


>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 471

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -1

Query: 188 TTXGTKSSLTGNSTEPRDKLISSQS 114
           T   + S++ GN++ P++ +ISSQ+
Sbjct: 318 TVKKSDSTVLGNTSIPKNSIISSQN 342


>SPAC1F7.08 |fio1||iron transport multicopper oxidase
           Fio1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 622

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +2

Query: 26  EALD*IEASNNLGQPSWHIHGHRTCTLEGQTARRSIY 136
           + +D I  +++ G+  +H+HGH    LE       +Y
Sbjct: 403 DVVDVIIDNHDTGKHPFHLHGHTFQVLERGEENAGLY 439


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 42   LRRQITSASHRGISTAIEPVLLRARLRGDQFIPGFC 149
            L+R++ S +  G +  +E +LL+  + GD+    +C
Sbjct: 1046 LKRELCS-TETGSAVTLESILLQCVMFGDKIYGAYC 1080


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 296 MVIGIQNGFXYVVMTSGTAPNLXRIR 219
           + +G +NG  YVV T    PN   +R
Sbjct: 401 LAVGDENGLVYVVNTRTEDPNKAILR 426


>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 80  IHGHRTCTLEGQTARRSIYPW 142
           +   R   + GQT R   YPW
Sbjct: 258 VSSDRLIEMNGQTVRGRAYPW 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,116,270
Number of Sequences: 5004
Number of extensions: 17716
Number of successful extensions: 47
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)