Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1028
         (299 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1252 - 35748000-35748173,35748243-35748375,35749771-357498...    28   1.6  
09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438     26   4.7  
09_02_0224 - 5984128-5984923,5985667-5986718,5986800-5987776,598...    26   4.7  
03_01_0564 - 4176177-4178096                                           26   4.7  
02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377...    26   6.3  
02_04_0388 - 22564866-22565216,22565437-22565445                       26   6.3  
08_02_1563 + 27886202-27886446,27886533-27886618,27886942-278870...    25   8.3  
06_01_0197 - 1525945-1526622                                           25   8.3  

>01_06_1252 -
           35748000-35748173,35748243-35748375,35749771-35749847,
           35750465-35750509,35750584-35750679,35751125-35751130,
           35751259-35751388,35751510-35751706
          Length = 285

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -1

Query: 170 SSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN-QVLLFFRTYA 6
           SS  G+ +  +D  I   SG       G   A   G GY+ PQSN  +L+  +++A
Sbjct: 117 SSKAGDGSVKKDT-IGPHSGASSSSAQGMVGAYTQGMGYMQPQSNFHILVVLQSFA 171


>09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438
          Length = 617

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 195 PSXQWRPSXDPGQVRSCPRCH 257
           P  QWRPS  P +V  C  CH
Sbjct: 236 PPAQWRPSQIPPRVAGC--CH 254


>09_02_0224 -
           5984128-5984923,5985667-5986718,5986800-5987776,
           5988427-5989228,5990966-5991016,5992391-5993464,
           5994458-5994706
          Length = 1666

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -3

Query: 279 ERIPVCSDDIGDSSEPXQDPXRVSIXKMVXXNRWYQVIV 163
           +R+P+C +DIG  ++   D  + ++ K+    R Y+V+V
Sbjct: 141 QRLPLCIEDIGSQNKLSPDEEKRALQKLNASVR-YKVLV 178


>03_01_0564 - 4176177-4178096
          Length = 639

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 122 RRSIYPWVLWSYLSTMTWY 178
           RR ++PWVL  ++ ++ W+
Sbjct: 467 RRFLFPWVLGGFVMSIIWF 485


>02_05_1331 + 35736543-35736638,35737407-35737525,35737670-35737715,
            35738117-35738172,35738452-35738547,35738844-35738961,
            35739406-35739672,35740023-35740124,35740302-35740659,
            35740750-35740863,35741045-35741676,35741895-35742103,
            35742597-35742819,35743419-35743538,35743888-35743914,
            35744281-35745045,35745431-35748511
          Length = 2142

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 122  SQSGPQEYRFDGRGYATMAGRG 57
            ++SGP +Y   G G+ T+ G+G
Sbjct: 2072 ARSGPLQYAAAGSGFGTLMGQG 2093


>02_04_0388 - 22564866-22565216,22565437-22565445
          Length = 119

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 52  K*PRPAIVAYPRPSNLYS*G 111
           K P PA+V YP P N Y  G
Sbjct: 80  KKPEPAVVEYPYPWNCYPYG 99


>08_02_1563 +
           27886202-27886446,27886533-27886618,27886942-27887030,
           27887193-27887432,27887527-27887648,27888103-27888178,
           27888276-27888383,27888465-27888641,27888959-27889176,
           27889313-27889445,27889584-27889807,27890052-27890205,
           27890297-27890380
          Length = 651

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 294 GDRHSERIPVCSDDIGDSSEPXQDP 220
           G++   +IP  + ++ DS EP  DP
Sbjct: 414 GNKKVRKIPSVAANVNDSKEPLSDP 438


>06_01_0197 - 1525945-1526622
          Length = 225

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/41 (29%), Positives = 15/41 (36%)
 Frame = -2

Query: 184 PXVPSHR*QVTPQNPGIN*SPRSLALKSTGSMAVDMPRWLA 62
           P  P H     P  PG       + +  T +  V MP W A
Sbjct: 176 PPPPQHAPSTPPAQPGWCRVAMGIPVSGTSAAVVGMPAWAA 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,904,010
Number of Sequences: 37544
Number of extensions: 136467
Number of successful extensions: 359
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)