Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1028
         (299 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47339| Best HMM Match : Rubredoxin (HMM E-Value=0.76)               28   1.6  
SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.6  
SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)               27   2.1  
SB_24255| Best HMM Match : Herpes_PAP (HMM E-Value=2)                  27   2.1  
SB_14604| Best HMM Match : PT (HMM E-Value=5.1)                        27   2.1  
SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_24577| Best HMM Match : Ribosomal_L44 (HMM E-Value=4.4)             27   3.7  
SB_27024| Best HMM Match : Pkinase (HMM E-Value=4.7e-25)               26   4.9  
SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   4.9  
SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)                   26   6.5  
SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)            26   6.5  
SB_13998| Best HMM Match : Kringle (HMM E-Value=0.0016)                25   8.6  
SB_5714| Best HMM Match : CBM_X (HMM E-Value=1.9)                      25   8.6  

>SB_47339| Best HMM Match : Rubredoxin (HMM E-Value=0.76)
          Length = 730

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/51 (31%), Positives = 16/51 (31%)
 Frame = +3

Query: 147 CGVTCQR*LGTXGCXXPSXQWRPSXDPGQVRSCPRCHHYIXESVLNADHHV 299
           C   C R  G  GC  P         P   R CP  HHY         H V
Sbjct: 281 CDGLC-RSCGVVGCSLPVVGPDDQVQPWDWRDCPDYHHYFRSQTCWEAHRV 330


>SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/51 (31%), Positives = 16/51 (31%)
 Frame = +3

Query: 147 CGVTCQR*LGTXGCXXPSXQWRPSXDPGQVRSCPRCHHYIXESVLNADHHV 299
           C   C R  G  GC  P         P   R CP  HHY         H V
Sbjct: 519 CDGLC-RSCGVVGCSLPVVGPDDQVQPWDWRDCPDYHHYFRSQTCWEAHRV 568


>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
          Length = 3561

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = -1

Query: 176  TKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAP 3
            TK   TGN  EP +     Q         G G+A   G+GY T ++ Q   +   YAP
Sbjct: 3494 TKEGRTGNEYEPSEG--PGQGTGHVSGASGAGHAGTGGQGYGTSRTGQ--FYGSVYAP 3547


>SB_24255| Best HMM Match : Herpes_PAP (HMM E-Value=2)
          Length = 919

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = -1

Query: 176 TKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAP 3
           TK   TGN  EP +     Q         G G+A   G+GY T ++ Q   +   YAP
Sbjct: 38  TKEGRTGNEYEPSEG--PGQGTGHVSGASGAGHAGTGGQGYGTSRTGQ--FYGSVYAP 91


>SB_14604| Best HMM Match : PT (HMM E-Value=5.1)
          Length = 344

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 200 RWXPTTXGTKSSLTGNSTEPRDKLISSQSGPQ 105
           R+  TT GTK   +G S  PRD+  +  + PQ
Sbjct: 225 RYQATTLGTKPQPSGPSHNPRDQATTLGTKPQ 256



 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 188 TTXGTKSSLTGNSTEPRDKLISSQSGPQEY 99
           TT GTK   +G S  PRD+  +  + PQ +
Sbjct: 2   TTLGTKPKPSGPSQNPRDQATTLGTKPQPW 31


>SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -1

Query: 191 PTTXGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGR-GYLTPQSNQVL 27
           P+T G  S+        +     +  G +EYRFDG   A +    G L P ++ V+
Sbjct: 291 PSTWGDMSTFENGGIPVKTLSKLTSPGAKEYRFDGNSLAGLQTHVGSLIPITSPVM 346


>SB_24577| Best HMM Match : Ribosomal_L44 (HMM E-Value=4.4)
          Length = 196

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
 Frame = -1

Query: 257 MTSGTAPNLXRIRXGSPLXRWXPTTXGTKSSLTGNSTEPRDKLISSQSG--PQEYRFDG- 87
           +T+G+     ++  G P+ RW  T        TG+  E   +   SQ G  PQ YR  G 
Sbjct: 96  VTTGSPVTRWKVTTGLPVTRWKVTYRA-----TGHKVESYLQGYRSQGGRLPQGYRSQGG 150

Query: 86  ---RGYATMAGR 60
              +GY +  G+
Sbjct: 151 RLPQGYRSQGGK 162


>SB_27024| Best HMM Match : Pkinase (HMM E-Value=4.7e-25)
          Length = 1595

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 212  TLXGSWXGSELSPMSSLHTGIRSECRSP 295
            +L  SW  S+  PM+SL  G R +  SP
Sbjct: 1336 SLMRSWKRSKRQPMTSLDRGSRDQIDSP 1363


>SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 840

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 188 TTXGTKSSLTGNSTEPRDKLISSQSGPQEY--RFDGRGYATMAGRGYLTPQ 42
           TT GTK   +G S  PRD+  +  + PQ +    + R  AT  G    TPQ
Sbjct: 383 TTLGTKPQPSGPSHNPRDQATTLGTKPQPWGPSHNPRDQATTLG---TTPQ 430



 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 188 TTXGTKSSLTGNSTEPRDKLISSQSGPQ 105
           TT GTK   +G S  PRD+  +  + PQ
Sbjct: 609 TTLGTKPQPSGPSHNPRDQATTLGTKPQ 636


>SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)
          Length = 889

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = -1

Query: 245 TAPNLXRIRXGSPLXRWXPTTXGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMA 66
           T P+L      + +        G  SSL GN++ P   L +S + PQ     G  + + A
Sbjct: 528 TDPSLGTASQSASIFGTAVNPSGQLSSLFGNTSHPSTTLTASTNNPQPSTQSGALFGSAA 587


>SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)
          Length = 921

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = -1

Query: 197  WXPTTXGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAG 63
            W P        LT +  E     I    GP+ Y ++GR +A   G
Sbjct: 867  WHPPRGDYLGDLTNDLDEGEYITIFVSGGPKNYGYNGRPFAKCEG 911


>SB_13998| Best HMM Match : Kringle (HMM E-Value=0.0016)
          Length = 832

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 140 WVLWSYLSTMTWY 178
           WV+ SYL+  TWY
Sbjct: 65  WVITSYLTNCTWY 77


>SB_5714| Best HMM Match : CBM_X (HMM E-Value=1.9)
          Length = 975

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/51 (29%), Positives = 15/51 (29%)
 Frame = +3

Query: 147 CGVTCQR*LGTXGCXXPSXQWRPSXDPGQVRSCPRCHHYIXESVLNADHHV 299
           C   C R  G  GC  P         P   R C  CH Y         H V
Sbjct: 477 CHGLC-RSCGVVGCSLPVVGPDDQIQPWDWRDCSDCHRYFRSQACWEAHRV 526


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,905,105
Number of Sequences: 59808
Number of extensions: 147595
Number of successful extensions: 378
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)