Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1028
         (299 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC146674-1|AAI46675.1|  788|Homo sapiens Unknown (protein for MG...    30   1.2  
Z99289-2|CAI42325.1| 1823|Homo sapiens laminin, alpha 4 protein.       29   2.7  
X91171-1|CAA62596.1| 1816|Homo sapiens laminin alpha 4 protein.        29   2.7  
X76939-1|CAA54258.1| 1581|Homo sapiens laminin A3 protein.             29   2.7  
S78569-1|AAB34635.1| 1816|Homo sapiens laminin alpha 4 chain pro...    29   2.7  
BC066552-1|AAH66552.1| 1816|Homo sapiens LAMA4 protein protein.        29   2.7  
AL590106-3|CAI12950.1| 1823|Homo sapiens laminin, alpha 4 protein.     29   2.7  
AB210027-1|BAE06109.1| 1852|Homo sapiens LAMA4 variant protein p...    29   2.7  
X58531-1|CAA41418.1| 2628|Homo sapiens laminin A chain protein.        29   3.5  
BC062318-1|AAH62318.1|  559|Homo sapiens LAMA1 protein protein.        28   4.7  
BC039051-1|AAH39051.1|  747|Homo sapiens LAMA1 protein protein.        28   4.7  

>BC146674-1|AAI46675.1|  788|Homo sapiens Unknown (protein for
           MGC:164982) protein.
          Length = 788

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 179 GTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYL 51
           GT+ S+ G    P+ ++  + S      FDGR   +  GR YL
Sbjct: 735 GTEGSIEGFLEAPKMEMSQAPSSVMSLHFDGRAQDSRTGRDYL 777


>Z99289-2|CAI42325.1| 1823|Homo sapiens laminin, alpha 4 protein.
          Length = 1823

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 140  RDKLISSQSGPQEYRFDGRGYATM 69
            RDKL  +QS    Y FDG GYA +
Sbjct: 1037 RDKLAFTQSRAASYFFDGSGYAVV 1060


>X91171-1|CAA62596.1| 1816|Homo sapiens laminin alpha 4 protein.
          Length = 1816

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 140  RDKLISSQSGPQEYRFDGRGYATM 69
            RDKL  +QS    Y FDG GYA +
Sbjct: 1030 RDKLAFTQSRAASYFFDGSGYAVV 1053


>X76939-1|CAA54258.1| 1581|Homo sapiens laminin A3 protein.
          Length = 1581

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 140 RDKLISSQSGPQEYRFDGRGYATM 69
           RDKL  +QS    Y FDG GYA +
Sbjct: 795 RDKLAFTQSRAASYFFDGSGYAVV 818


>S78569-1|AAB34635.1| 1816|Homo sapiens laminin alpha 4 chain protein.
          Length = 1816

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 140  RDKLISSQSGPQEYRFDGRGYATM 69
            RDKL  +QS    Y FDG GYA +
Sbjct: 1030 RDKLAFTQSRAASYFFDGSGYAVV 1053


>BC066552-1|AAH66552.1| 1816|Homo sapiens LAMA4 protein protein.
          Length = 1816

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 140  RDKLISSQSGPQEYRFDGRGYATM 69
            RDKL  +QS    Y FDG GYA +
Sbjct: 1030 RDKLAFTQSRAASYFFDGSGYAVV 1053


>AL590106-3|CAI12950.1| 1823|Homo sapiens laminin, alpha 4 protein.
          Length = 1823

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 140  RDKLISSQSGPQEYRFDGRGYATM 69
            RDKL  +QS    Y FDG GYA +
Sbjct: 1037 RDKLAFTQSRAASYFFDGSGYAVV 1060


>AB210027-1|BAE06109.1| 1852|Homo sapiens LAMA4 variant protein
            protein.
          Length = 1852

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 140  RDKLISSQSGPQEYRFDGRGYATM 69
            RDKL  +QS    Y FDG GYA +
Sbjct: 1066 RDKLAFTQSRAASYFFDGSGYAVV 1089


>X58531-1|CAA41418.1| 2628|Homo sapiens laminin A chain protein.
          Length = 2628

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 125  SSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAP 3
            SSQ+    + FDG GY+ +     L     Q+++ F T++P
Sbjct: 2300 SSQNEDPSFHFDGSGYSVV--EKSLPATVTQIIMLFNTFSP 2338


>BC062318-1|AAH62318.1|  559|Homo sapiens LAMA1 protein protein.
          Length = 559

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 95  FDGRGYATMAGRGYLTPQSNQVLLFFRT 12
           FDG GYA +   GY       + L FRT
Sbjct: 379 FDGSGYAALVKEGYKVQSDVNITLEFRT 406


>BC039051-1|AAH39051.1|  747|Homo sapiens LAMA1 protein protein.
          Length = 747

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 95  FDGRGYATMAGRGYLTPQSNQVLLFFRT 12
           FDG GYA +   GY       + L FRT
Sbjct: 567 FDGSGYAALVKEGYKVQSDVNITLEFRT 594


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,684,123
Number of Sequences: 237096
Number of extensions: 812658
Number of successful extensions: 1869
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1869
length of database: 76,859,062
effective HSP length: 76
effective length of database: 58,839,766
effective search space used: 1353314618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)