Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1028
(299 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80847-7|AAO91744.1| 778|Caenorhabditis elegans Hypothetical pr... 27 1.9
U80847-6|AAK68190.1| 796|Caenorhabditis elegans Hypothetical pr... 27 1.9
U80847-5|AAK68189.1| 793|Caenorhabditis elegans Hypothetical pr... 27 1.9
Z71266-7|CAA95845.1| 987|Caenorhabditis elegans Hypothetical pr... 27 3.3
U97189-7|AAK68257.3| 782|Caenorhabditis elegans Hypothetical pr... 26 5.8
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 25 7.6
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 25 7.6
Z46381-10|CAE17898.2| 366|Caenorhabditis elegans Hypothetical p... 25 7.6
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 25 7.6
AF047656-7|AAC05108.2| 462|Caenorhabditis elegans Ligand-gated ... 25 7.6
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 25 7.6
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 25 7.6
>U80847-7|AAO91744.1| 778|Caenorhabditis elegans Hypothetical
protein C17H11.6c protein.
Length = 778
Score = 27.5 bits (58), Expect = 1.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 225 PGQVRSCPRCHHYI 266
PG V++CPRC YI
Sbjct: 252 PGDVKACPRCKTYI 265
>U80847-6|AAK68190.1| 796|Caenorhabditis elegans Hypothetical
protein C17H11.6b protein.
Length = 796
Score = 27.5 bits (58), Expect = 1.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 225 PGQVRSCPRCHHYI 266
PG V++CPRC YI
Sbjct: 252 PGDVKACPRCKTYI 265
>U80847-5|AAK68189.1| 793|Caenorhabditis elegans Hypothetical
protein C17H11.6a protein.
Length = 793
Score = 27.5 bits (58), Expect = 1.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 225 PGQVRSCPRCHHYI 266
PG V++CPRC YI
Sbjct: 252 PGDVKACPRCKTYI 265
>Z71266-7|CAA95845.1| 987|Caenorhabditis elegans Hypothetical
protein R06C7.8 protein.
Length = 987
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 41 IEASNNLGQPSWHIHGHRTCTLEGQTAR 124
+E +NN+ P+WHI TC L Q AR
Sbjct: 777 LEYANNMKDPNWHI----TCFLITQMAR 800
>U97189-7|AAK68257.3| 782|Caenorhabditis elegans Hypothetical
protein C48B6.8 protein.
Length = 782
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 236 SELSPMSSLHTGIRSECRSP 295
SE+ +S LH I SEC SP
Sbjct: 407 SEVQNVSKLHINILSECASP 426
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/71 (21%), Positives = 31/71 (43%)
Frame = -1
Query: 215 GSPLXRWXPTTXGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN 36
G P+ W G +++ G +P+ I+ + DG GY + + ++
Sbjct: 2865 GEPIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKAT 2920
Query: 35 QVLLFFRTYAP 3
++ L F T++P
Sbjct: 2921 KISLSFLTFSP 2931
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/71 (21%), Positives = 31/71 (43%)
Frame = -1
Query: 215 GSPLXRWXPTTXGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN 36
G P+ W G +++ G +P+ I+ + DG GY + + ++
Sbjct: 2865 GEPIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKAT 2920
Query: 35 QVLLFFRTYAP 3
++ L F T++P
Sbjct: 2921 KISLSFLTFSP 2931
>Z46381-10|CAE17898.2| 366|Caenorhabditis elegans Hypothetical
protein M01F1.9 protein.
Length = 366
Score = 25.4 bits (53), Expect = 7.6
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Frame = -1
Query: 212 SPLXRWXPTTXGTKSSLTGNSTEPRDKLISSQSGP---QEYRFD---GRGYATMAGRGYL 51
+P R PTT TKS+ T S+ P Q GP +++ D R RG+L
Sbjct: 62 TPSSRPRPTTSVTKSAATVYSSHPNILFCELQLGPGQTKQFVCDIPLSRNGIPPTFRGHL 121
Query: 50 TPQSNQV 30
SN++
Sbjct: 122 VKYSNRI 128
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/71 (21%), Positives = 31/71 (43%)
Frame = -1
Query: 215 GSPLXRWXPTTXGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN 36
G P+ W G +++ G +P+ I+ + DG GY + + ++
Sbjct: 679 GEPIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKAT 734
Query: 35 QVLLFFRTYAP 3
++ L F T++P
Sbjct: 735 KISLSFLTFSP 745
>AF047656-7|AAC05108.2| 462|Caenorhabditis elegans Ligand-gated ion
channel protein 6 protein.
Length = 462
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 61 RPAIVAYPRPSNLYS*GPDCEEINLSLGS 147
RPA+V+ P P + + D ++ N+S+GS
Sbjct: 144 RPAVVSSPCPLEIDNFPYDVQKCNISMGS 172
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/71 (21%), Positives = 31/71 (43%)
Frame = -1
Query: 215 GSPLXRWXPTTXGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN 36
G P+ W G +++ G +P+ I+ + DG GY + + ++
Sbjct: 2865 GEPIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKAT 2920
Query: 35 QVLLFFRTYAP 3
++ L F T++P
Sbjct: 2921 KISLSFLTFSP 2931
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/71 (21%), Positives = 31/71 (43%)
Frame = -1
Query: 215 GSPLXRWXPTTXGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN 36
G P+ W G +++ G +P+ I+ + DG GY + + ++
Sbjct: 2865 GEPIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKAT 2920
Query: 35 QVLLFFRTYAP 3
++ L F T++P
Sbjct: 2921 KISLSFLTFSP 2931
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,357,682
Number of Sequences: 27780
Number of extensions: 106588
Number of successful extensions: 279
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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