Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1028
         (299 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    20   7.6  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    20   7.6  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    20   7.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   7.6  

>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 179 GTKSSLTGNSTEPRDKLI 126
           GT   LTG S E + KLI
Sbjct: 148 GTFYPLTGMSKETQQKLI 165


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -3

Query: 108 SRVQVRWPWICHDGWPR 58
           S +   + W+  DGW R
Sbjct: 219 SNLSQPFQWLASDGWGR 235


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 179 GTKSSLTGNSTEPRDKLI 126
           GT   LTG S E + KLI
Sbjct: 164 GTFYPLTGMSKETQQKLI 181


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -3

Query: 108 SRVQVRWPWICHDGWPR 58
           S +   + W+  DGW R
Sbjct: 309 SNLSQPFQWLASDGWGR 325


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,572
Number of Sequences: 438
Number of extensions: 1393
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)