Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1028
         (299 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36610.1 68417.m05196 hydrolase, alpha/beta fold family prote...    28   1.3  
At3g14070.1 68416.m01777 cation exchanger, putative (CAX9) simil...    27   2.3  
At4g00300.1 68417.m00037 fringe-related protein + weak similarit...    26   5.4  
At1g73750.1 68414.m08539 expressed protein contains Pfam profile...    25   9.4  

>At4g36610.1 68417.m05196 hydrolase, alpha/beta fold family protein
           low similarity to
           2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase
           [Pseudomonas fluorescens] GI:1871461; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 317

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -1

Query: 290 IGIQNGFXYVVMT-SGTAPNLXRIRXGSPLXRWXPTTXGTKSSLTGNSTEP 141
           + +Q    Y +M  +G  P    I  G+ +  W P     K+S TG  T+P
Sbjct: 5   VEVQKPLLYGLMKMAGVVPYTLEIEPGTKINFWVPKETLKKNSGTGKPTKP 55


>At3g14070.1 68416.m01777 cation exchanger, putative (CAX9) similar
           to sodium/calcium exchanger protein [Mus musculus]
           gi|13925661|gb|AAK49407; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 643

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = +2

Query: 122 RRSIYPWVLWSYLSTMTWYXRLXXTILXMETLXGSWXG 235
           RR + PWVL  ++ ++ W+  +   ++ +    G   G
Sbjct: 473 RRFLIPWVLGGFIMSIVWFYMIANELVALLVTFGEIYG 510


>At4g00300.1 68417.m00037 fringe-related protein + weak similarity
           to Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 785

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 288 RHSERIPVCSDDIGDSSEPXQDPXRVSIXKMVXXNRWYQVIV 163
           RH E  P C   I D SE  Q    + + K    +RW +V++
Sbjct: 433 RHDEWYPKCEWGIADPSEINQ----IFVYKKPTPDRWSKVVI 470


>At1g73750.1 68414.m08539 expressed protein contains Pfam profile:
           PF00561 alpha/beta hydrolase fold
          Length = 452

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 59  LGQPSWHIHGHRTCTLEGQTARRSIYPWV 145
           +G P    +GH+   + G+TAR  +YP +
Sbjct: 415 VGSPGGPHYGHQDL-ISGRTARNEVYPLI 442


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,139,113
Number of Sequences: 28952
Number of extensions: 103064
Number of successful extensions: 286
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)