Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1027
         (770 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    23   3.6  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    23   3.6  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   3.6  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   4.7  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   6.2  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    22   6.2  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   8.2  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   8.2  

>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 454 EEVYKDRDQFAGLVREVAGRTSEE 525
           E   + R+QF  LVRE+ G    E
Sbjct: 188 ENAAEHREQFVSLVRELRGAFKAE 211


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 697 IAFFSHSASLIPASRLARATPTS 629
           IAF+ H+ +L+ AS+    +P+S
Sbjct: 254 IAFYGHAFTLVDASQHDLGSPSS 276


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -2

Query: 244 HHFKGYTLDVRNQTPGPCPSTHY 176
           H   GY L  RN  P P PST Y
Sbjct: 193 HDAAGYGL--RNYGPEPVPSTPY 213


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 625 TLTSVSLWLTEMLVLGKRNVRKTQWTSNI 711
           T++ VS W     +  K+N+ K Q  +N+
Sbjct: 273 TVSQVSNWFGNKRIRYKKNIGKAQEEANL 301


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +1

Query: 481 FAGLVREVAGRTSEEWESRFCPSRLRTSTTMSSIWPAW 594
           FAG  R V       W S +C ++ + +  +S+    W
Sbjct: 64  FAGKNRGVTEGCDYPWRSNYCDNKQQANPPISTEHCDW 101


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 173 TIVGGWAWAWCLVTDVQRISLEVMTLNR 256
           T+VGG  +A+CL+  ++ ++    T+ R
Sbjct: 80  TLVGGPEYAYCLLPPLESLATVEETVVR 107


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 185 HPLWYVSWSARNS 147
           +PL Y SW++R S
Sbjct: 144 YPLTYCSWTSRRS 156


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -1

Query: 251 SMSSLQGIYVGRP*PDTRPMPIHPLWYVSWSA--RNSHLKLLAP 126
           S SS   + + +P   + P   HP W  +W +  R+S  +  AP
Sbjct: 56  SPSSAHTVLIPQPLHPSVPRLGHPQWPFAWGSLXRSSSPQTSAP 99


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,640
Number of Sequences: 336
Number of extensions: 4752
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)