Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1027
(770 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 29 0.74
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 29 0.74
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 28 1.3
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 2.2
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 3.0
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 3.0
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 3.0
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 3.0
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 3.0
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 3.0
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 3.0
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 3.0
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 3.0
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 3.0
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 3.0
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|... 27 3.9
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 26 5.2
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 29.1 bits (62), Expect = 0.74
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 309 RPVQDHERRRTSHNCLRAVPGQDRQRD-*DDCPANVGGSFASYSRN 443
+PV +H+ ++TS VPG R +D DCP++ F S N
Sbjct: 218 QPVSEHKEKQTSFLRRFRVPGFSRDKDKTKDCPSSNSNPFHLASSN 263
Score = 25.4 bits (53), Expect = 9.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -3
Query: 444 SSENSSQMTLQRLQDSHLNLFDG 376
S++NSS + Q + DS++N+F G
Sbjct: 137 SNQNSSLKSFQSVPDSNVNVFGG 159
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 29.1 bits (62), Expect = 0.74
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 105 MLPILNPFTVTFTIHTLHFTTKTITNLFNLPKN 7
+L + NP + + +H TT I NLFN+P N
Sbjct: 734 LLNLENPISGSQGLHYKRLTTDMIHNLFNVPSN 766
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 645 LANRDAGIREAECEKNAMDVKYSMDTKIEDNTRLFKLQKGSL 770
L NR+ R + +KN + +D+ ++ NT K K SL
Sbjct: 14 LDNRELAFRAKDGDKNIFHTESQLDSSLKKNTAFMKRCKSSL 55
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 243 ITSRDIRWTSVTRHQAHAHPPTMVRFVVGPKQPPETISASLGPTV 109
+T ++ WTS T H A R+++ + P E IS ++G TV
Sbjct: 299 LTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFE-ISHNVGRTV 342
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 597 KSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKY 710
KS++ +VK DV L N + I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 597 KSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKY 710
KS++ +VK DV L N + I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 597 KSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKY 710
KS++ +VK DV L N + I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 597 KSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKY 710
KS++ +VK DV L N + I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 597 KSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKY 710
KS++ +VK DV L N + I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 597 KSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKY 710
KS++ +VK DV L N + I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 597 KSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKY 710
KS++ +VK DV L N + I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 597 KSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKY 710
KS++ +VK DV L N + I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 597 KSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKY 710
KS++ +VK DV L N + I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 597 KSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKY 710
KS++ +VK DV L N + I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 597 KSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKY 710
KS++ +VK DV L N + I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 270
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 556 LIVKDRISIPILPTSGQPLRVPS 488
LIV DR+ +PILPT+ L P+
Sbjct: 37 LIVIDRVELPILPTTVLALLFPN 59
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -1
Query: 491 KPANWSLSLYTSSTVRVPRIARK*PSNVCRTV--ILISLTVLPRNCSQAVV 345
+P + L L+TS T P++ N+CR++ I S + PR+ S V+
Sbjct: 159 QPDDVMLVLHTSGTTGRPKVVPLTHKNLCRSIHNITTSYRLDPRDTSYVVM 209
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,452,075
Number of Sequences: 5004
Number of extensions: 77384
Number of successful extensions: 256
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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