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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1027
         (770 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0682 - 5575297-5575308,5575391-5575516,5575779-5575885,557...    31   1.0  
02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496...    30   1.8  
01_06_1331 + 36373059-36373338,36374190-36374263,36374530-363746...    29   3.1  
12_02_1270 + 27466516-27466621,27466722-27466885,27467385-274681...    29   5.4  
05_07_0045 - 27304696-27305299,27305392-27305521,27305625-27305760     29   5.4  
12_02_0754 - 22817277-22817657,22817796-22817927,22818026-228182...    28   7.2  
10_01_0222 - 2387703-2387744,2387797-2388119,2388170-2388251           28   7.2  
05_04_0302 - 20004802-20005360,20005412-20005623                       28   7.2  
02_02_0403 - 9866122-9867231                                           28   7.2  
08_01_0349 - 3082700-3083407                                           28   9.5  
06_02_0148 - 12280794-12280962,12281102-12281210,12281283-122813...    28   9.5  
01_07_0298 - 42586007-42589742,42590167-42590280,42590295-425904...    28   9.5  

>11_01_0682 -
           5575297-5575308,5575391-5575516,5575779-5575885,
           5575911-5576013,5576122-5576187,5576378-5576461,
           5577448-5577522,5577615-5577668,5577752-5577895,
           5578632-5578685,5578877-5578981,5579076-5579173,
           5579660-5579729,5580444-5580566,5580647-5580727,
           5580996-5581476,5581684-5581816,5582550-5582598,
           5582704-5582892,5583642-5583703,5583762-5585316
          Length = 1256

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = -3

Query: 351 SCEKFVFVHDLALGDSGHRERHSLGRFNVLAHRFNVITSRDIRWTSVT 208
           S EK      +A+ DSGHR R S    N  +     I  + I W  VT
Sbjct: 740 SVEKLGRSRSVAISDSGHRSRQSTADSNEPSGDSQPIADQPIEWVKVT 787


>02_05_1147 -
           34447519-34448042,34448126-34449092,34449458-34449657,
           34449867-34450051,34450130-34450228,34450316-34450357,
           34450516-34450860,34450956-34451101,34451213-34451296,
           34451424-34451502,34451596-34451675,34451824-34451875,
           34451992-34452026
          Length = 945

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 570 DVQYLASLGKSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKY 710
           D QY+ S G+ Q +NV+R +   V+L N    I+E   +  A   KY
Sbjct: 114 DFQYIDSSGRDQGSNVRRKSQSLVSLVNDKERIQEVRQKALATRDKY 160


>01_06_1331 +
           36373059-36373338,36374190-36374263,36374530-36374699,
           36374731-36374822,36375087-36375323,36375922-36375980,
           36376462-36376644,36377347-36377437,36377959-36378002,
           36378085-36378207
          Length = 450

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = +2

Query: 44  VVKCSVCIVKVTVKGFKMGNIHTVGPNEAL--IVSGGCFGPTTKRTIVGGWAWAW 202
           VV  +  +V    K +  GN  TV P   +    SG   GP+  R +   W W +
Sbjct: 161 VVMITAYLVSFVPKKYNKGNSITVSPRSQVSRTSSGAASGPSESRDLGQVWGWGY 215


>12_02_1270 +
           27466516-27466621,27466722-27466885,27467385-27468173,
           27468263-27468479,27469078-27469256,27470233-27470474,
           27470607-27470994
          Length = 694

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 156 PKQPPETISASLGPTVWMLPILNPFTVTF 70
           PK  P T  + L P VW L + NP+  +F
Sbjct: 442 PKDNPYTDDSDLEPEVWALGLRNPWRCSF 470


>05_07_0045 - 27304696-27305299,27305392-27305521,27305625-27305760
          Length = 289

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 658 SRLARATPTSASLFTLAVCDFPKLARYWTSS 566
           S  A A P S +   L+ C FP +A  W +S
Sbjct: 244 SGFAGAAPDSKATLELSACYFPNMAEMWAAS 274


>12_02_0754 -
           22817277-22817657,22817796-22817927,22818026-22818272,
           22818473-22818909
          Length = 398

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 32  VIVLVVKCSVCIVKVTVKGFKMGNIHTVGPNEAL 133
           V++  +KC  C+ K+ +  F  GN+  +  N +L
Sbjct: 255 VVIDFIKCFPCVEKLYIVAFNQGNLKNIRRNVSL 288


>10_01_0222 - 2387703-2387744,2387797-2388119,2388170-2388251
          Length = 148

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 519 GRMGIEILSFTIKDVYDDVQYLASLGKSQTANVKRDADVGVAL 647
           G MG  I  F+IKD+Y+D + + S      ++   D ++ V L
Sbjct: 10  GMMGPIIKVFSIKDIYEDAKSIISPSSYSDSDSNSDDEMEVVL 52


>05_04_0302 - 20004802-20005360,20005412-20005623
          Length = 256

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 648 PERHRRQRPSSRWPSATSPSW 586
           P+R  R RPSSRW    S SW
Sbjct: 72  PQRLDRDRPSSRWRWRYSSSW 92


>02_02_0403 - 9866122-9867231
          Length = 369

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +1

Query: 379 VKEIKMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAGRTSEEWESRF 540
           V E   T L+ L   L A+L     E+V  D  +FAG+VR         W+ RF
Sbjct: 201 VVECTCTALRRLVAELDAVLWKPMYEDVV-DARRFAGVVRADDESPEMSWKERF 253


>08_01_0349 - 3082700-3083407
          Length = 235

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -1

Query: 695 CVFLTFRFPNTSISV-SQSDTDVSVPLHVGRLRLPQAGQILDIVVDVLNR 549
           C  L F     SI   S +   V+VPLH  R R  + G  +D V   LNR
Sbjct: 116 CFLLAFLLNVQSIRYYSHTGLLVNVPLHAHRHRRRRPGLAVDYVTATLNR 165


>06_02_0148 -
           12280794-12280962,12281102-12281210,12281283-12281385,
           12281587-12281618,12281709-12281926,12282035-12282150,
           12282428-12282683,12282912-12282999,12283393-12283468,
           12283562-12283620,12285236-12285305,12285399-12285539
          Length = 478

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = +3

Query: 420 SFASYSRNSYSRRGVQRQGPIRGLGTRSGWPDVGRMGIEILSFTIKDVYDD-VQYLASLG 596
           S  SYS +S +   V+R G   G    S W  +   GIE L    K  Y++   Y+   G
Sbjct: 328 SHKSYSTDSLTNERVERNGTDIGPKAGSSWLYIYPKGIEELLLYTKRTYNNPTIYITENG 387

Query: 597 KSQTAN 614
             +  N
Sbjct: 388 VDEVNN 393


>01_07_0298 - 42586007-42589742,42590167-42590280,42590295-42590437,
            42591174-42591347
          Length = 1388

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = +2

Query: 44   VVKCSVCIVKVTVKGFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWAWCLVTDVQ 223
            V+ C  C+V V +      N   + P + LI  G    P+ K  +VGG       VTDV 
Sbjct: 1167 VIYCLRCLVDVDIPL----NQGCLAPVKILIPKGSFLSPSDKAAVVGGNVLTSQRVTDVV 1222

Query: 224  RISLEVMTLNR-CASTL 271
             ++ +    ++ C + L
Sbjct: 1223 LMAFQACACSQGCMNNL 1239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,716,101
Number of Sequences: 37544
Number of extensions: 572159
Number of successful extensions: 2028
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2028
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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