Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1027
(770 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0682 - 5575297-5575308,5575391-5575516,5575779-5575885,557... 31 1.0
02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496... 30 1.8
01_06_1331 + 36373059-36373338,36374190-36374263,36374530-363746... 29 3.1
12_02_1270 + 27466516-27466621,27466722-27466885,27467385-274681... 29 5.4
05_07_0045 - 27304696-27305299,27305392-27305521,27305625-27305760 29 5.4
12_02_0754 - 22817277-22817657,22817796-22817927,22818026-228182... 28 7.2
10_01_0222 - 2387703-2387744,2387797-2388119,2388170-2388251 28 7.2
05_04_0302 - 20004802-20005360,20005412-20005623 28 7.2
02_02_0403 - 9866122-9867231 28 7.2
08_01_0349 - 3082700-3083407 28 9.5
06_02_0148 - 12280794-12280962,12281102-12281210,12281283-122813... 28 9.5
01_07_0298 - 42586007-42589742,42590167-42590280,42590295-425904... 28 9.5
>11_01_0682 -
5575297-5575308,5575391-5575516,5575779-5575885,
5575911-5576013,5576122-5576187,5576378-5576461,
5577448-5577522,5577615-5577668,5577752-5577895,
5578632-5578685,5578877-5578981,5579076-5579173,
5579660-5579729,5580444-5580566,5580647-5580727,
5580996-5581476,5581684-5581816,5582550-5582598,
5582704-5582892,5583642-5583703,5583762-5585316
Length = 1256
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -3
Query: 351 SCEKFVFVHDLALGDSGHRERHSLGRFNVLAHRFNVITSRDIRWTSVT 208
S EK +A+ DSGHR R S N + I + I W VT
Sbjct: 740 SVEKLGRSRSVAISDSGHRSRQSTADSNEPSGDSQPIADQPIEWVKVT 787
>02_05_1147 -
34447519-34448042,34448126-34449092,34449458-34449657,
34449867-34450051,34450130-34450228,34450316-34450357,
34450516-34450860,34450956-34451101,34451213-34451296,
34451424-34451502,34451596-34451675,34451824-34451875,
34451992-34452026
Length = 945
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 570 DVQYLASLGKSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKY 710
D QY+ S G+ Q +NV+R + V+L N I+E + A KY
Sbjct: 114 DFQYIDSSGRDQGSNVRRKSQSLVSLVNDKERIQEVRQKALATRDKY 160
>01_06_1331 +
36373059-36373338,36374190-36374263,36374530-36374699,
36374731-36374822,36375087-36375323,36375922-36375980,
36376462-36376644,36377347-36377437,36377959-36378002,
36378085-36378207
Length = 450
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = +2
Query: 44 VVKCSVCIVKVTVKGFKMGNIHTVGPNEAL--IVSGGCFGPTTKRTIVGGWAWAW 202
VV + +V K + GN TV P + SG GP+ R + W W +
Sbjct: 161 VVMITAYLVSFVPKKYNKGNSITVSPRSQVSRTSSGAASGPSESRDLGQVWGWGY 215
>12_02_1270 +
27466516-27466621,27466722-27466885,27467385-27468173,
27468263-27468479,27469078-27469256,27470233-27470474,
27470607-27470994
Length = 694
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 156 PKQPPETISASLGPTVWMLPILNPFTVTF 70
PK P T + L P VW L + NP+ +F
Sbjct: 442 PKDNPYTDDSDLEPEVWALGLRNPWRCSF 470
>05_07_0045 - 27304696-27305299,27305392-27305521,27305625-27305760
Length = 289
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 658 SRLARATPTSASLFTLAVCDFPKLARYWTSS 566
S A A P S + L+ C FP +A W +S
Sbjct: 244 SGFAGAAPDSKATLELSACYFPNMAEMWAAS 274
>12_02_0754 -
22817277-22817657,22817796-22817927,22818026-22818272,
22818473-22818909
Length = 398
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 32 VIVLVVKCSVCIVKVTVKGFKMGNIHTVGPNEAL 133
V++ +KC C+ K+ + F GN+ + N +L
Sbjct: 255 VVIDFIKCFPCVEKLYIVAFNQGNLKNIRRNVSL 288
>10_01_0222 - 2387703-2387744,2387797-2388119,2388170-2388251
Length = 148
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 519 GRMGIEILSFTIKDVYDDVQYLASLGKSQTANVKRDADVGVAL 647
G MG I F+IKD+Y+D + + S ++ D ++ V L
Sbjct: 10 GMMGPIIKVFSIKDIYEDAKSIISPSSYSDSDSNSDDEMEVVL 52
>05_04_0302 - 20004802-20005360,20005412-20005623
Length = 256
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 648 PERHRRQRPSSRWPSATSPSW 586
P+R R RPSSRW S SW
Sbjct: 72 PQRLDRDRPSSRWRWRYSSSW 92
>02_02_0403 - 9866122-9867231
Length = 369
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +1
Query: 379 VKEIKMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAGRTSEEWESRF 540
V E T L+ L L A+L E+V D +FAG+VR W+ RF
Sbjct: 201 VVECTCTALRRLVAELDAVLWKPMYEDVV-DARRFAGVVRADDESPEMSWKERF 253
>08_01_0349 - 3082700-3083407
Length = 235
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -1
Query: 695 CVFLTFRFPNTSISV-SQSDTDVSVPLHVGRLRLPQAGQILDIVVDVLNR 549
C L F SI S + V+VPLH R R + G +D V LNR
Sbjct: 116 CFLLAFLLNVQSIRYYSHTGLLVNVPLHAHRHRRRRPGLAVDYVTATLNR 165
>06_02_0148 -
12280794-12280962,12281102-12281210,12281283-12281385,
12281587-12281618,12281709-12281926,12282035-12282150,
12282428-12282683,12282912-12282999,12283393-12283468,
12283562-12283620,12285236-12285305,12285399-12285539
Length = 478
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = +3
Query: 420 SFASYSRNSYSRRGVQRQGPIRGLGTRSGWPDVGRMGIEILSFTIKDVYDD-VQYLASLG 596
S SYS +S + V+R G G S W + GIE L K Y++ Y+ G
Sbjct: 328 SHKSYSTDSLTNERVERNGTDIGPKAGSSWLYIYPKGIEELLLYTKRTYNNPTIYITENG 387
Query: 597 KSQTAN 614
+ N
Sbjct: 388 VDEVNN 393
>01_07_0298 - 42586007-42589742,42590167-42590280,42590295-42590437,
42591174-42591347
Length = 1388
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +2
Query: 44 VVKCSVCIVKVTVKGFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWAWCLVTDVQ 223
V+ C C+V V + N + P + LI G P+ K +VGG VTDV
Sbjct: 1167 VIYCLRCLVDVDIPL----NQGCLAPVKILIPKGSFLSPSDKAAVVGGNVLTSQRVTDVV 1222
Query: 224 RISLEVMTLNR-CASTL 271
++ + ++ C + L
Sbjct: 1223 LMAFQACACSQGCMNNL 1239
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,716,101
Number of Sequences: 37544
Number of extensions: 572159
Number of successful extensions: 2028
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2028
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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