Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1027
         (770 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.)             135   4e-32
SB_21580| Best HMM Match : Flotillin (HMM E-Value=0)                   58   6e-09
SB_40561| Best HMM Match : Keratin_B2 (HMM E-Value=1.1)                33   0.34 
SB_40037| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.78 
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_33770| Best HMM Match : Troponin (HMM E-Value=8.9)                  30   2.4  
SB_35370| Best HMM Match : Ank (HMM E-Value=4.8e-06)                   29   4.2  
SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 29   5.5  
SB_17963| Best HMM Match : RVP (HMM E-Value=0.3)                       28   7.3  
SB_33673| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_22617| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_16934| Best HMM Match : Ldl_recept_b (HMM E-Value=1.7e-39)          28   9.6  
SB_15262| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_14711| Best HMM Match : HIM (HMM E-Value=4.9)                       28   9.6  
SB_9527| Best HMM Match : MFS_1 (HMM E-Value=0.022)                    28   9.6  
SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)                       28   9.6  

>SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 664

 Score =  135 bits (326), Expect = 4e-32
 Identities = 64/87 (73%), Positives = 73/87 (83%)
 Frame = +1

Query: 247 IEPMCEYVETAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEIKMTVLQTLEGHL 426
           + P CE VETAQGV +TVTGVAQ K+M E  LL TACEQFLGKT ++I+  VLQTLEGHL
Sbjct: 335 LNPTCEAVETAQGVAVTVTGVAQVKVMTEPRLLKTACEQFLGKTTRQIESVVLQTLEGHL 394

Query: 427 RAILGTLTVEEVYKDRDQFAGLVREVA 507
           RAILGTL+VEE+YKDR+ FA LVREVA
Sbjct: 395 RAILGTLSVEEIYKDREAFAALVREVA 421



 Score =  126 bits (303), Expect = 3e-29
 Identities = 60/86 (69%), Positives = 69/86 (80%)
 Frame = +3

Query: 510 PDVGRMGIEILSFTIKDVYDDVQYLASLGKSQTANVKRDADVGVALANRDAGIREAECEK 689
           PDVGRMGIEILSFTIKD+ D V YL SLGK+QTA VKRDAD+GVA A RDAGIREAECEK
Sbjct: 423 PDVGRMGIEILSFTIKDIEDHVDYLNSLGKTQTAKVKRDADIGVAEAKRDAGIREAECEK 482

Query: 690 NAMDVKYSMDTKIEDNTRLFKLQKGS 767
             MDV Y   T I D++R +++QK +
Sbjct: 483 QKMDVVYETQTNIADSSREYQMQKAA 508



 Score = 91.9 bits (218), Expect = 5e-19
 Identities = 39/53 (73%), Positives = 45/53 (84%)
 Frame = +2

Query: 95  MGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWAWCLVTDVQRISLEVMTLN 253
           MGN +TVGPNEAL+VSGGC G   K+T++GGWA+AW  VTDVQ ISLEVMTLN
Sbjct: 284 MGNCYTVGPNEALVVSGGCCGSAAKKTVIGGWAFAWACVTDVQSISLEVMTLN 336


>SB_21580| Best HMM Match : Flotillin (HMM E-Value=0)
          Length = 393

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 27/56 (48%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
 Frame = +1

Query: 307 VAQCKIMNED-ELLTTACEQFLGKTVKEIKMTVLQTLEGHLRAILGTLTVEEVYKD 471
           + Q KI  ++ E+L  AC+QFLGK+ ++ +   L+TLEGH RAI+GT+TVE    D
Sbjct: 63  ILQVKIQGQNQEMLHAACQQFLGKSAEQTRHIALETLEGHQRAIMGTMTVEVASSD 118



 Score = 35.9 bits (79), Expect = 0.036
 Identities = 19/55 (34%), Positives = 32/55 (58%)
 Frame = +3

Query: 513 DVGRMGIEILSFTIKDVYDDVQYLASLGKSQTANVKRDADVGVALANRDAGIREA 677
           D+  MGI I+S+TIKD+ D+ + +A   +      K + D  +A A RD  +++A
Sbjct: 118 DLVNMGISIVSYTIKDIRDEEEAIA---EEARLKAKYENDTQIAKAKRDFELKKA 169


>SB_40561| Best HMM Match : Keratin_B2 (HMM E-Value=1.1)
          Length = 1139

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
 Frame = -1

Query: 524  SSDVRPATSRTKPANWSLSLYTSSTVRVPRIARK*PSNVCRTVILISLTVLPRNC-SQAV 348
            SS  RPA   T   N  L+ +TSS +     +RK P+ +  T I  ++T    NC + +V
Sbjct: 675  SSRKRPAPITTTITNHRLNCHTSSVI---LSSRKRPAPITTTPITTTITNHRLNCHTNSV 731

Query: 347  VRSSSSFMILHWATPVTVSGTPWAVSTYSHIGSMSSLQGIYVGRP*PDTRPMPIHPL 177
            + SS         TP+T + T   ++ +++   +SS +     RP P T  +  H L
Sbjct: 732  ILSSRKRPAPITTTPITTTITNHRLNCHTNSVILSSRK-----RPAPITTTITNHRL 783



 Score = 31.9 bits (69), Expect = 0.59
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
 Frame = -1

Query: 524  SSDVRPATSRTKPANWSLSLYTSSTVRVPRIARK*PSNVCRTVILISLTVLPRNC-SQAV 348
            SS  RPA   T   N  L+ +TSS +     +RK P+ +  T I  ++T    NC + +V
Sbjct: 884  SSRKRPAPITTTITNHRLNCHTSSVI---LSSRKRPAPITTTPITTTITNHRLNCHTNSV 940

Query: 347  VRSSSSFMILHWATPVTVSGTPWAVSTYSHIGSMSSLQGIYVGRP*PDTRPMPIHPL 177
            + SS         TP+T + T   ++ ++    +SS +     RP P T  +  H L
Sbjct: 941  ILSSRKRPAPITTTPITTTITNHRLNCHTKSVILSSRK-----RPAPITTTITNHRL 992


>SB_40037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 222

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 23/76 (30%), Positives = 37/76 (48%)
 Frame = +1

Query: 313 QCKIMNEDELLTTACEQFLGKTVKEIKMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGL 492
           +  I N+D+  T            + ++ VL T E   R IL T   +E+   +D F  L
Sbjct: 110 EVNITNDDKSPTRRVSAMNHGLAHDGQLVVLWTREAD-RDILQTC--QELGSTQDTFIQL 166

Query: 493 VREVAGRTSEEWESRF 540
            + +AG+T E+ E+RF
Sbjct: 167 AKRIAGKTPEQVENRF 182


>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2388

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 201 QAHAHPPTMVRFVVGPKQPPETISASLGPTVWMLPILNPF 82
           QA   PPTM++ +  P  PP  I     P+V + P  NPF
Sbjct: 402 QASIPPPTMIQTLPPPSVPPPPIGVPNRPSV-LYPNNNPF 440


>SB_33770| Best HMM Match : Troponin (HMM E-Value=8.9)
          Length = 133

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +1

Query: 385 EIKMTVLQTLEGHLRAILGTLTVEEVYKD-RDQFAGLVREVAGRTSEEWESRFCP 546
           E++  V + +E    A+   +T EEV+K+  ++   L+RE   R SEE++ +  P
Sbjct: 22  ELREKVRKIVEVGENALKNNVTQEEVWKEGMEKTNELIRETKNRLSEEFKEKLKP 76


>SB_35370| Best HMM Match : Ank (HMM E-Value=4.8e-06)
          Length = 813

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -3

Query: 294 ERHSLGRFNVLAHRFNVITSRDIRWTSVTRHQAHAHP 184
           E H +   ++ A   +++T R++ W  VTR + ++ P
Sbjct: 201 EGHEIEELSLQAQSCSILTGRELNWEYVTRRRCYSCP 237


>SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 1841

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +3

Query: 546  FTIKDVYDDVQYLASLGKSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKYSMDTK 725
            FTI+ +   +++  SLG+ Q  +  R   +G  LA  D      + E N  ++   +D +
Sbjct: 810  FTIELIGGKLRFATSLGRRQDVDDMRSLTLGDGLA--DNKFHTVKVEHNGREIWVYLDQR 867

Query: 726  IEDNTR 743
             +D T+
Sbjct: 868  TKDATK 873


>SB_17963| Best HMM Match : RVP (HMM E-Value=0.3)
          Length = 338

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +1

Query: 199 LVSGYGRPTYIP*SDDIEPMCEYVETAQGVPLTVTGVAQCKIMN--EDELLTTA-CEQFL 369
           + +  G P ++  +  I+  C + +T   V + +  +   KI+N  + E+ +TA  E + 
Sbjct: 213 ITTASGEPLHVHGTVSIDITCAWQDTHMNVMIPIPIILALKILNRTKSEISSTARSESYT 272

Query: 370 GKTVKEIK 393
           G+T+ E++
Sbjct: 273 GQTLCELR 280


>SB_33673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 592 WGSRRRPT*RGTLTSVSLWLTEMLVLGKRNVRKTQWTSNIR 714
           WG    PT    +   SLWLT +LV+ K       W  N+R
Sbjct: 173 WGQEPTPT--YVMKMSSLWLTPLLVIEKTYSDLRVWQWNVR 211


>SB_22617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 567

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = -1

Query: 374 LPRNCSQAVVRSSSSFM-ILHWATPVTVSGTPWAVS---TYSHIGSMSSLQGIYVGRP 213
           +P N +++++ +  + + ++ W TP+T++   W      T S +G+  S    ++G P
Sbjct: 222 MPVNTNRSLMGNPDNRLTVVSWVTPITLTVVSWVTPITLTVSFMGNPDSTNRSFMGNP 279


>SB_16934| Best HMM Match : Ldl_recept_b (HMM E-Value=1.7e-39)
          Length = 407

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +2

Query: 116 GPNEALIVSGGCFGPTTKRTIVGGWAWAWCLVTDVQRISLEVMT---LNRC 259
           GPNE L+ +GGC    T   ++GG++   CL      +SL+  T   +N C
Sbjct: 325 GPNECLVNNGGC--SHTCLNLIGGYS---CLCPPGFELSLDKRTCTDINEC 370


>SB_15262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 568

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = -1

Query: 374 LPRNCSQAVVRSSSSFM-ILHWATPVTVSGTPWAVS---TYSHIGSMSSLQGIYVGRP 213
           +P N +++++ +  + + ++ W TP+T++   W      T S +G+  S    ++G P
Sbjct: 223 MPVNTNRSLMGNPDNRLTVVSWVTPITLTVVSWVTPITLTVSFMGNPDSTNRSFMGNP 280


>SB_14711| Best HMM Match : HIM (HMM E-Value=4.9)
          Length = 282

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
 Frame = +3

Query: 510 PDVGRMGIEI---LSFTIKDVYDDVQYLASLGKSQTANVKRDA---DVGVALANRDAGIR 671
           P+V   G+     L   + D  DD+  LA + +S       D    DVGVAL + D    
Sbjct: 133 PEVAEAGVADDVPLGTFVDDFADDIGALADMDESADEVALEDGVADDVGVALGDMDESAN 192

Query: 672 EAECEKNAMD 701
           E   E    D
Sbjct: 193 EVALEDGVAD 202


>SB_9527| Best HMM Match : MFS_1 (HMM E-Value=0.022)
          Length = 631

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 362 CSQAVVRSSSSFMILHWATPVTVSGTPWAVSTYSHIGSMSSL 237
           C      SS S ++ H+A  V    T WA    SH G +S+L
Sbjct: 123 CKGCDENSSQSELLGHYAVVVIFLQTGWACVQVSHAGIISAL 164


>SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1705

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -2

Query: 613 LAVCDFPKLARYWTSS*TSLIVKDRISIPILPTSGQPL-RVPSPRIGPCLCTPLLL*EFR 437
           LA+ D P++      S  +L    R+ IPI PT+  P    P+PR+   L T L + + +
Sbjct: 505 LAMWDIPEMESCVKISMNALHRPYRLCIPIFPTTATPTPTAPTPRV---LSTALAMWDIQ 561

Query: 436 E 434
           E
Sbjct: 562 E 562


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,844,547
Number of Sequences: 59808
Number of extensions: 618783
Number of successful extensions: 1971
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1971
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)