Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1027
(770 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger pro... 31 1.2
L23645-6|AAO91714.1| 635|Caenorhabditis elegans Zinc finger pro... 31 1.2
L23645-4|AAK26137.1| 867|Caenorhabditis elegans Zinc finger pro... 31 1.2
AC006638-4|AAP82654.1| 312|Caenorhabditis elegans Stomatin prot... 30 2.1
AC006638-3|AAK85483.1| 367|Caenorhabditis elegans Stomatin prot... 30 2.1
U40409-9|AAA81390.3| 314|Caenorhabditis elegans Stomatin protei... 29 2.8
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr... 29 4.8
U64859-7|AAC69095.1| 344|Caenorhabditis elegans Serpentine rece... 29 4.8
U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protei... 29 4.8
U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protei... 29 4.8
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein. 29 4.8
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein. 29 4.8
Z83233-9|CAB05766.1| 405|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z71260-1|CAA95798.1| 744|Caenorhabditis elegans Hypothetical pr... 28 6.4
U60113-1|AAB03334.1| 715|Caenorhabditis elegans SEM-4 short for... 28 6.4
U60112-1|AAB03333.1| 744|Caenorhabditis elegans SEM-4 long form... 28 6.4
AL110485-4|CAB60350.1| 220|Caenorhabditis elegans Hypothetical ... 28 6.4
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 28 8.5
>U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger
protein protein.
Length = 839
Score = 30.7 bits (66), Expect = 1.2
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = -1
Query: 503 TSRTKPANWSLSLYTSSTVRVPRIARK*PSNVCRTVIL-ISLTVLPRNCSQAVVRSSSSF 327
TS PAN S SL+ +RK PSN+ TV L + T L + + +S
Sbjct: 702 TSVPLPANHSSSLFEDIKAPKATYSRKTPSNIPLTVPLSTAATALTTTTAASSGAPVNSN 761
Query: 326 MILHWATPVTVSGTPWAVS 270
+ H ATP T +G P A +
Sbjct: 762 IQNHRATPST-AGAPMAAT 779
>L23645-6|AAO91714.1| 635|Caenorhabditis elegans Zinc finger
protein protein 1,isoform c protein.
Length = 635
Score = 30.7 bits (66), Expect = 1.2
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = -1
Query: 503 TSRTKPANWSLSLYTSSTVRVPRIARK*PSNVCRTVIL-ISLTVLPRNCSQAVVRSSSSF 327
TS PAN S SL+ +RK PSN+ TV L + T L + + +S
Sbjct: 470 TSVPLPANHSSSLFEDIKAPKATYSRKTPSNIPLTVPLSTAATALTTTTAASSGAPVNSN 529
Query: 326 MILHWATPVTVSGTPWAVS 270
+ H ATP T +G P A +
Sbjct: 530 IQNHRATPST-AGAPMAAT 547
>L23645-4|AAK26137.1| 867|Caenorhabditis elegans Zinc finger
protein protein 1,isoform a protein.
Length = 867
Score = 30.7 bits (66), Expect = 1.2
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = -1
Query: 503 TSRTKPANWSLSLYTSSTVRVPRIARK*PSNVCRTVIL-ISLTVLPRNCSQAVVRSSSSF 327
TS PAN S SL+ +RK PSN+ TV L + T L + + +S
Sbjct: 702 TSVPLPANHSSSLFEDIKAPKATYSRKTPSNIPLTVPLSTAATALTTTTAASSGAPVNSN 761
Query: 326 MILHWATPVTVSGTPWAVS 270
+ H ATP T +G P A +
Sbjct: 762 IQNHRATPST-AGAPMAAT 779
>AC006638-4|AAP82654.1| 312|Caenorhabditis elegans Stomatin protein
5, isoform b protein.
Length = 312
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 424 LRAILGTLTVEEVYKDRDQFAGLVREVAGRTSEEW 528
LR +LGT T+ E+ +RD A + +V ++ W
Sbjct: 231 LRNVLGTKTLSEMLSERDAIASISEKVLDEGTDPW 265
>AC006638-3|AAK85483.1| 367|Caenorhabditis elegans Stomatin protein
5, isoform a protein.
Length = 367
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 424 LRAILGTLTVEEVYKDRDQFAGLVREVAGRTSEEW 528
LR +LGT T+ E+ +RD A + +V ++ W
Sbjct: 231 LRNVLGTKTLSEMLSERDAIASISEKVLDEGTDPW 265
>U40409-9|AAA81390.3| 314|Caenorhabditis elegans Stomatin protein 2
protein.
Length = 314
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 424 LRAILGTLTVEEVYKDRDQFAGLVREVAGRTSEEW 528
LR +LGT ++ E+ DR+ A ++ + +E W
Sbjct: 190 LRNMLGTRSLSEILSDRETLAASMQTILDEATESW 224
>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
protein C12C8.3b protein.
Length = 1143
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 289 PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---KMTVLQTLEGHLRAILGT 444
PL VA +++NE +LL CE+ G T+K+I +T T E +RA T
Sbjct: 511 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 564
>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
protein C12C8.3a protein.
Length = 1147
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 289 PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---KMTVLQTLEGHLRAILGT 444
PL VA +++NE +LL CE+ G T+K+I +T T E +RA T
Sbjct: 515 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 568
>U64859-7|AAC69095.1| 344|Caenorhabditis elegans Serpentine
receptor, class h protein11 protein.
Length = 344
Score = 28.7 bits (61), Expect = 4.8
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Frame = -3
Query: 399 SHLNLFDGLAQELL--AGSC-EKFVFVHDLALGDSGHRERHSLGRFNVLAHRFNVITSRD 229
S + +F GLAQ ++ GS E F F ++L + L RF VL +RF +I
Sbjct: 92 SGMFIFYGLAQSVMLTVGSILEMFFFRYNLISVYKNDLFKKLL-RFQVLLYRFLIIIHPI 150
Query: 228 IRWTSVTRHQAHAHPPTMVRFVVGPKQPPE 139
+ T++ TM ++ P PPE
Sbjct: 151 VAITTINYSIGVEAKATMELWLSNPNLPPE 180
>U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protein
1, isoform a protein.
Length = 330
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 424 LRAILGTLTVEEVYKDRDQFAGLVREVAGRTSEEW 528
LR ILGT T+ E+ DR++ + ++ +E W
Sbjct: 160 LRTILGTHTLSEILSDREKISADMKISLDEATEPW 194
>U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protein
1, isoform b protein.
Length = 325
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 424 LRAILGTLTVEEVYKDRDQFAGLVREVAGRTSEEW 528
LR ILGT T+ E+ DR++ + ++ +E W
Sbjct: 160 LRTILGTHTLSEILSDREKISADMKISLDEATEPW 194
>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
Length = 1147
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 289 PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---KMTVLQTLEGHLRAILGT 444
PL VA +++NE +LL CE+ G T+K+I +T T E +RA T
Sbjct: 515 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 568
>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
Length = 1143
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 289 PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---KMTVLQTLEGHLRAILGT 444
PL VA +++NE +LL CE+ G T+K+I +T T E +RA T
Sbjct: 511 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 564
>Z83233-9|CAB05766.1| 405|Caenorhabditis elegans Hypothetical
protein K06B4.10 protein.
Length = 405
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 115 DSVDVAHFESFYSDFHDTHTALHN 44
D +D+AH ESF+++ H T T N
Sbjct: 230 DYIDLAHSESFFTNDHQTFTERDN 253
>Z71260-1|CAA95798.1| 744|Caenorhabditis elegans Hypothetical
protein F15C11.1 protein.
Length = 744
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 562 TSLIVKDRISIPILPTSGQPLRVPSPRIGP 473
+S+ K + PILPTSG P P +GP
Sbjct: 657 SSVTEKPMLQSPILPTSGAPGASPLAMLGP 686
>U60113-1|AAB03334.1| 715|Caenorhabditis elegans SEM-4 short form
protein.
Length = 715
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 562 TSLIVKDRISIPILPTSGQPLRVPSPRIGP 473
+S+ K + PILPTSG P P +GP
Sbjct: 628 SSVTEKPMLQSPILPTSGAPGASPLAMLGP 657
>U60112-1|AAB03333.1| 744|Caenorhabditis elegans SEM-4 long form
protein.
Length = 744
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 562 TSLIVKDRISIPILPTSGQPLRVPSPRIGP 473
+S+ K + PILPTSG P P +GP
Sbjct: 657 SSVTEKPMLQSPILPTSGAPGASPLAMLGP 686
>AL110485-4|CAB60350.1| 220|Caenorhabditis elegans Hypothetical
protein Y46G5A.5 protein.
Length = 220
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -1
Query: 578 LDIVVDVLNREGQNLDSHSSDVRPATSRTKPANWSLSLY 462
L V+D+ + L H++D+ ATS + +NW L+LY
Sbjct: 102 LSAVIDIASHW---LHLHATDLSGATSHKQSSNWLLNLY 137
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 27.9 bits (59), Expect = 8.5
Identities = 22/75 (29%), Positives = 35/75 (46%)
Frame = +3
Query: 450 SRRGVQRQGPIRGLGTRSGWPDVGRMGIEILSFTIKDVYDDVQYLASLGKSQTANVKRDA 629
S RG +RQ PI G T W + R I + + VY+ G N K +
Sbjct: 608 SDRGRKRQ-PIAG--TLVNWGNFDRHCIYKFTRGNQVVYEGEVETMKAGMEVVTNAKTNT 664
Query: 630 DVGVALANRDAGIRE 674
+VG+AL++++ +E
Sbjct: 665 EVGLALSDKNIRFKE 679
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,464,082
Number of Sequences: 27780
Number of extensions: 457260
Number of successful extensions: 1378
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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