Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1027
(770 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14760.1 68417.m02271 M protein repeat-containing protein con... 31 1.1
At1g79350.1 68414.m09247 DNA-binding protein, putative contains ... 30 1.5
At3g59290.1 68416.m06609 epsin N-terminal homology (ENTH) domain... 29 2.6
At3g46700.1 68416.m05070 UDP-glucoronosyl/UDP-glucosyl transfera... 29 2.6
At1g42430.1 68414.m04893 expressed protein 29 2.6
At2g43160.3 68415.m05361 epsin N-terminal homology (ENTH) domain... 29 4.5
At2g43160.2 68415.m05360 epsin N-terminal homology (ENTH) domain... 29 4.5
At2g43160.1 68415.m05359 epsin N-terminal homology (ENTH) domain... 29 4.5
At3g46680.1 68416.m05067 UDP-glucoronosyl/UDP-glucosyl transfera... 28 5.9
At3g23750.1 68416.m02986 leucine-rich repeat family protein / pr... 28 5.9
At2g38570.1 68415.m04738 expressed protein ; expression supporte... 28 5.9
At5g13590.1 68418.m01572 expressed protein 28 7.9
At2g27940.1 68415.m03387 zinc finger (C3HC4-type RING finger) fa... 28 7.9
At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein, c... 28 7.9
>At4g14760.1 68417.m02271 M protein repeat-containing protein
contains Pfam profile: PF02370 M protein repeat
Length = 1676
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/65 (21%), Positives = 29/65 (44%)
Frame = +3
Query: 567 DDVQYLASLGKSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKYSMDTKIEDNTRL 746
+++Q + K ++AN KR + +A ++ EC + + +D + +
Sbjct: 731 EELQVSLAAEKQESANYKRSTESRLADLQKNVSFLREECRSRKREYEDELDRVVNKQVEI 790
Query: 747 FKLQK 761
F LQK
Sbjct: 791 FILQK 795
>At1g79350.1 68414.m09247 DNA-binding protein, putative contains
Pfam PF00628: PHD-finger domain; contains TIGRFAMS
TIGR01053: zinc finger domain, LSD1 subclass; contains
Pfam PF00271: Helicase conserved C-terminal domain;
similar to WSSV086 (GI:19481678)[shrimp white spot
syndrome virus]; similar to nuclear protein Np95
(GI:17939938) [Mus musculus]
Length = 1299
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 216 SVTRHQAHAHPPTMVRFVVGPKQPPETIS 130
S+T Q+H++PPT V P PPE ++
Sbjct: 152 SLTASQSHSNPPTPAAPTVPPPPPPEEVN 180
>At3g59290.1 68416.m06609 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain;
similar to Af10-protein - Avena fatua, EMBL:U80041
Length = 1024
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +3
Query: 576 QYLASLGKSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKY 710
QY+ S GK Q +NV++ A VAL N I E + A KY
Sbjct: 116 QYIDSSGKDQGSNVRKKAQSLVALVNDKERITEVREKAAANRDKY 160
>At3g46700.1 68416.m05070 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 385
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -1
Query: 374 LPRNCSQAVVRSSSSFMILHWATPVTVSGTPWAVSTYSHIGSMSSLQGIYVGRP 213
LP S+ V+ I+ WA + V G P +SH G S+L+ I G P
Sbjct: 248 LPEEVSKMVLEKG---YIVKWAPQIEVLGHPSVGGFWSHCGWNSTLESIVEGVP 298
>At1g42430.1 68414.m04893 expressed protein
Length = 435
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +2
Query: 467 KTGTNSRAWYAKWLAGRRKNGNRDSVLHD*GRLRRCPVSGQLGEVADGQ 613
K+GT + WY KW G + H GRL + GE DG+
Sbjct: 242 KSGTENAGWYEKWWEKYDAKGWTEKGAHKYGRLNEQSWWEKWGEHYDGR 290
>At2g43160.3 68415.m05361 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Af10-protein (GI:1724114) [Avena fatua]
Length = 895
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +3
Query: 570 DVQYLASLGKSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKY 710
D QY+ S G+ Q +NV++ + VAL N I E + A KY
Sbjct: 114 DFQYIDSGGRDQGSNVRKKSQSLVALVNDKERIAEVRQKAAANRDKY 160
>At2g43160.2 68415.m05360 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Af10-protein (GI:1724114) [Avena fatua]
Length = 895
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +3
Query: 570 DVQYLASLGKSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKY 710
D QY+ S G+ Q +NV++ + VAL N I E + A KY
Sbjct: 114 DFQYIDSGGRDQGSNVRKKSQSLVALVNDKERIAEVRQKAAANRDKY 160
>At2g43160.1 68415.m05359 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Af10-protein (GI:1724114) [Avena fatua]
Length = 895
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +3
Query: 570 DVQYLASLGKSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKY 710
D QY+ S G+ Q +NV++ + VAL N I E + A KY
Sbjct: 114 DFQYIDSGGRDQGSNVRKKSQSLVALVNDKERIAEVRQKAAANRDKY 160
>At3g46680.1 68416.m05067 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 449
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 323 ILHWATPVTVSGTPWAVSTYSHIGSMSSLQGIYVGRP 213
I+ WA + V G P +SH G S+L+ I G P
Sbjct: 329 IVKWAPQIEVLGHPAVGGFWSHCGWNSTLESIVEGVP 365
>At3g23750.1 68416.m02986 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 928
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 558 DVYDDVQYLASLGKSQTANVKRDADVGVALANRDAGIREAE--CEKNAMDVKYSMDTKI 728
DV V+YL SL +Q + + RD L D + A+ KNA D KYS++T++
Sbjct: 687 DVARGVEYLHSL--AQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRL 743
>At2g38570.1 68415.m04738 expressed protein ; expression supported
by MPSS
Length = 302
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 14 GKLNKFVIVLVVKCSVCIVKVTVKGFKMGNIHT 112
G+ +F++ +V+ +C+V T+K GN+ T
Sbjct: 164 GESERFLLTDIVRVLLCLVSATLKVVSFGNVFT 196
>At5g13590.1 68418.m01572 expressed protein
Length = 1190
Score = 27.9 bits (59), Expect = 7.9
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = -1
Query: 515 VRPATSRTKPANWSLSLYTSSTVRVPRIAR-K*PS-NVCRTVILISLTVLPRNCSQAVVR 342
VR AT T+ + LS+ + R ++ PS + +TV+ IS+ P SQ+ V
Sbjct: 328 VRQATESTQVSPIGLSIKGLKHEGIGRFSQGNSPSFGILKTVVPISIKAEPNTFSQSEVF 387
Query: 341 SSSSFMILHWATPVTVS 291
+ M+ H TP+ S
Sbjct: 388 NRKDGMLNHPHTPIMQS 404
>At2g27940.1 68415.m03387 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 237
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/53 (20%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = -3
Query: 156 PKQPPETISASLGPTVWMLPILNPFTVTFTIHTLHF--TTKTITNLFNLPKNQ 4
P QPP + +++ T+++L + F F+++ HF ++ + ++ ++P+ +
Sbjct: 39 PPQPPSALDSTMALTIFILLVALFFMGFFSVYFRHFADSSSSTVDISSMPRTR 91
>At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein,
chloroplast (DRT111) nearly identical to SP|P42698
DNA-damage-repair/toleration protein DRT111, chloroplast
precursor {Arabidopsis thaliana}; contains Pfam profiles
PF01585: G-patch domain, PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 387
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 518 DVRPATSRTKPANWSLSLYTSSTVRVPRIARK*PS 414
D+ P T KP+ S S+++SST P RK P+
Sbjct: 8 DLPPPTDDEKPSGNSSSVWSSSTKMAPPTLRKPPA 42
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,460,901
Number of Sequences: 28952
Number of extensions: 428475
Number of successful extensions: 1312
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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