Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1026
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 52 1e-07
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo... 48 2e-06
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 40 3e-04
SPCC1442.13c |||RNA-binding protein, G-pathc type|Schizosaccharo... 38 0.002
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 35 0.015
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 33 0.034
SPBC1604.16c |||RNA-binding protein, G-patch type |Schizosacchar... 33 0.045
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 33 0.059
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce... 27 2.2
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 27 3.9
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch... 26 5.1
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 26 5.1
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 26 5.1
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 26 6.8
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|... 26 6.8
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 51.6 bits (118), Expect = 1e-07
Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Frame = +3
Query: 54 LKNGKEPDLSDYKEF-KLKEDNVGF--KMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQ 224
LKN K ++S K K+K + GF KML+K+G+ +GQGLG GI EP+ +P +
Sbjct: 95 LKN-KNDEVSQAKNIPKMKFNTTGFGAKMLEKMGYKQGQGLGANAEGIAEPVQSKLRP-E 152
Query: 225 NLGLGA 242
+GLGA
Sbjct: 153 RVGLGA 158
>SPAC2G11.04 |||RNA-binding protein, G-patch type
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 301
Score = 47.6 bits (108), Expect = 2e-06
Identities = 18/33 (54%), Positives = 24/33 (72%)
Frame = +3
Query: 105 KEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPIN 203
K++NV KMLQ+ GW EGQGLG GI+ P++
Sbjct: 251 KKENVALKMLQRCGWKEGQGLGQHNQGIINPLH 283
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 40.3 bits (90), Expect = 3e-04
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +3
Query: 114 NVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLG 239
NV KML +GWN+G GLG +GI E I + +GLG
Sbjct: 492 NVSMKMLNSMGWNKGSGLGTNENGIKEAIQPTMY-LPGVGLG 532
>SPCC1442.13c |||RNA-binding protein, G-pathc
type|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 37.5 bits (83), Expect = 0.002
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = +3
Query: 120 GFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQ 215
G ++L+ +GW+ G+GLG E G+V+P+ K+
Sbjct: 149 GKQLLEMMGWSRGKGLGSENQGMVDPVVAVKE 180
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 34.7 bits (76), Expect = 0.015
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 111 DNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGASTSD 254
+ +GFK+L GW G GLG + G + I K LG+GA ++
Sbjct: 26 NRLGFKLLSSYGWVNGNGLGEKQHGRIHNI-KVSLKDDTLGIGAKATN 72
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 33.5 bits (73), Expect = 0.034
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 99 KLKEDNVGFKMLQKLGWNEGQGLG-VEGSGIVEPINKAKQPVQNLGLG 239
++ ++N G ++L+KLGW G+GLG E G + + +A V GLG
Sbjct: 649 EISKENPGRRLLEKLGWYAGKGLGHPENEGSKDSL-RAIVKVSRSGLG 695
>SPBC1604.16c |||RNA-binding protein, G-patch type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 199
Score = 33.1 bits (72), Expect = 0.045
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +3
Query: 102 LKEDNVGFKMLQKLGWN---EGQGLGVEGSGIVEPINKAKQPVQNLGLGASTSDWCRPMT 272
LK ++G+++L + GW+ + GLG+E G P+ + +GLG +
Sbjct: 110 LKPKSLGYRVLSQYGWSPQGDTAGLGLENQGRRAPVRAFRVKNDTIGLGTKID--LEKVA 167
Query: 273 TSSTRTGNA*CSLTDS 320
+ R G C + S
Sbjct: 168 VNKCRKGKRQCQIQHS 183
>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 32.7 bits (71), Expect = 0.059
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 18 EELKK-FMEKYSALKNGKEPDLSDYKEFKLKEDNVGFKMLQKLGWN 152
+EL K + K + + D +EF ++D++G KML+ LGWN
Sbjct: 106 QELSKVYTSKINTIDTSIPIDDPLLREFSNRDDSIGEKMLKNLGWN 151
>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 494 YLFHYFVSIPFNVTMFSIIF 435
Y F+YFV+ PF +T +I F
Sbjct: 162 YFFNYFVTFPFELTTCAITF 181
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -1
Query: 730 IMYLK*SLSPVIVVIKITLTNSLRFSW*QTKKRNFSDYEIKTIN 599
I YL ++P+I V+ ITLT + ++ ++++ EI T+N
Sbjct: 135 IGYLSTYIAPLIFVLLITLTKEAVDDLKRRRRDSYANNEIYTVN 178
>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 530
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 6 FLPPEELKKFMEKYSALKNGKEPDLSDYKEFKLKEDNVGFKMLQKLGWNEG 158
+LP + ++SA+ G + YK KLK+ + FK + W EG
Sbjct: 82 YLPGATSSEIQSEHSAVLRGSLC-IQIYKPVKLKKIQLSFKGKSRTEWPEG 131
>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 537 NRTSDYAATLI*IRIFISLFCKHSFQCNNVFDNI*KYIM 421
N++ LI I +FI CKH F + VF + +IM
Sbjct: 71 NKSKVNEIQLISIEVFIIGICKHKFHSSTVFLCLGTHIM 109
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 448 FR*YLEIHNGLSMVYGIIYSTNNKYFK 368
+R YLE HNG+S Y +T N YF+
Sbjct: 87 YRKYLESHNGISNAYTASNNT-NYYFE 112
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -3
Query: 167 ETLTLIPSKLLKHFKPDIIFLQLELFIITQVWLF 66
E ++PSK K IIF L FIIT V+ F
Sbjct: 240 EKWVVVPSKFQFSQKTFIIFCFLSSFIITGVFFF 273
>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 6.8
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 723 YIICLKFCFNFFFI 764
+I+CLK+C +FFI
Sbjct: 435 FIVCLKYCSFYFFI 448
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,385
Number of Sequences: 5004
Number of extensions: 54649
Number of successful extensions: 140
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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