Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1026
(766 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0221 + 5962606-5963197,5963711-5963837,5963994-5964100,596... 67 1e-11
02_01_0500 - 3623837-3624019,3624591-3624778,3625209-3626147,362... 48 8e-06
04_01_0082 + 897026-897028,897101-897350,898454-898608,898686-89... 47 2e-05
08_02_0036 - 11455762-11455802,11455996-11456104,11456207-114568... 46 4e-05
02_05_1041 - 33713561-33714564,33714844-33714904,33715640-337159... 43 3e-04
03_01_0177 + 1424773-1424850,1425307-1425391,1425498-1425577,142... 38 0.009
12_02_1111 - 26157796-26160330 36 0.027
01_01_0489 + 3608720-3608811,3609326-3609431,3609518-3609581,360... 36 0.027
01_05_0166 + 18844468-18845184,18847394-18847690 35 0.062
04_04_0422 + 25098612-25099025,25099500-25099633,25099817-251000... 34 0.11
04_04_0489 + 25600543-25601368,25601441-25602282 34 0.14
03_02_0392 - 8070342-8071628 31 0.76
01_05_0604 - 23583244-23584989 30 2.3
05_06_0005 + 24802843-24803101,24804086-24804333,24804417-248045... 28 7.1
01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-70... 28 7.1
01_01_0088 + 688792-691441,691629-693013 28 7.1
08_02_0637 + 19571677-19571943,19572036-19572176,19572260-195723... 28 9.4
07_01_0415 - 3160059-3160445,3160584-3160727,3160903-3160971,316... 28 9.4
>09_02_0221 +
5962606-5963197,5963711-5963837,5963994-5964100,
5964185-5964328,5964700-5964822,5964921-5965103,
5965540-5965718,5965797-5965823
Length = 493
Score = 67.3 bits (157), Expect = 1e-11
Identities = 34/80 (42%), Positives = 48/80 (60%)
Frame = +3
Query: 3 DFLPPEELKKFMEKYSALKNGKEPDLSDYKEFKLKEDNVGFKMLQKLGWNEGQGLGVEGS 182
DF+P EEL+KFM + + K + K K++ DN+G K+L K+GW EG+GLG E S
Sbjct: 376 DFIPQEELEKFMARCNDAAAQKATKEAAEKA-KIQADNIGHKLLSKMGWREGEGLGSERS 434
Query: 183 GIVEPINKAKQPVQNLGLGA 242
G +PI +LG+GA
Sbjct: 435 GRADPIMAGDVKKDHLGVGA 454
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 206 GETTSTESRTGRVHFGLVSPDDDEFDAYRKRMML 307
G+ G V G V+ +DD ++ Y+KRMML
Sbjct: 443 GDVKKDHLGVGAVQPGEVTSEDDIYEQYKKRMML 476
>02_01_0500 - 3623837-3624019,3624591-3624778,3625209-3626147,
3626311-3626479,3626701-3626871,3626948-3627016,
3627094-3627201,3627844-3627997,3628659-3628738,
3628822-3628914,3628951-3629073,3629165-3629915,
3630123-3630163,3630338-3630385
Length = 1038
Score = 48.0 bits (109), Expect = 8e-06
Identities = 23/47 (48%), Positives = 31/47 (65%)
Frame = +3
Query: 102 LKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGA 242
+ E NVG ++L+ +GW EG GLG GSGI EP+ +AK GLG+
Sbjct: 959 IDESNVGNRILRNMGWQEGLGLGKTGSGIKEPV-QAKSVDVRAGLGS 1004
>04_01_0082 +
897026-897028,897101-897350,898454-898608,898686-898967,
899078-899160,899335-899485,899896-899952,900279-900479
Length = 393
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/52 (48%), Positives = 32/52 (61%)
Frame = +3
Query: 99 KLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGASTSD 254
+L NVGF++LQK+GW +G+GLG GI EPI KA LG+G D
Sbjct: 58 QLTSSNVGFRLLQKMGW-KGKGLGKNEQGITEPI-KAGIRDAKLGVGKQEQD 107
>08_02_0036 -
11455762-11455802,11455996-11456104,11456207-11456854,
11457422-11457491,11458563-11458624,11458729-11458803,
11459423-11459514,11460233-11461466
Length = 776
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/57 (38%), Positives = 35/57 (61%)
Frame = +3
Query: 69 EPDLSDYKEFKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLG 239
E D F++ G KM+ K+G+ EG GLG +G G+++PI ++P ++LGLG
Sbjct: 597 ESDSVKLGTFEMHTKGFGSKMMAKMGFIEGTGLGKDGQGMMQPIQPIQRP-KSLGLG 652
Score = 38.3 bits (85), Expect = 0.007
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 57 KNGKEPDLSDYKEFKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPI 200
+N ++ ++ F+ G KM+ ++G+ EG GLG +G GIV P+
Sbjct: 678 RNLRKVEIGGVGSFERHTKGFGSKMMARMGFVEGSGLGKDGQGIVNPL 725
>02_05_1041 -
33713561-33714564,33714844-33714904,33715640-33715951,
33716780-33716917
Length = 504
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +3
Query: 60 NGKEPDLSDYKEFKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPIN-KAKQPVQNLGL 236
+G + + + + +++ V KM+ K+G+ EG GLGV G G+++PI K P Q+L
Sbjct: 288 SGVQTETAIFAKWEHHTRGVASKMMAKMGYREGMGLGVSGQGMLDPIPVKVLPPKQSLDH 347
Query: 237 GASTSD 254
+ S+
Sbjct: 348 AVAASE 353
>03_01_0177 +
1424773-1424850,1425307-1425391,1425498-1425577,
1425771-1425898,1425962-1426049,1426187-1426277,
1426712-1426881,1427151-1427438,1427527-1427643,
1427924-1427976,1428029-1428090,1429042-1429118,
1429269-1429322,1429417-1429476,1429581-1429658,
1429805-1429851,1429933-1430051,1430280-1430364,
1430443-1430557,1430662-1430784,1430869-1430969,
1431346-1431475
Length = 742
Score = 37.9 bits (84), Expect = 0.009
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 102 LKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPIN-KAKQPVQNLGLGASTSDW 257
+ + F++++++GW EG+GLG + GI + K KQ +G+ + + W
Sbjct: 13 IARQSAAFRLMKQMGWEEGEGLGKDKQGIKGHVRVKNKQDTLGVGVDSPHNKW 65
>12_02_1111 - 26157796-26160330
Length = 844
Score = 36.3 bits (80), Expect = 0.027
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +3
Query: 126 KMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGA 242
KM+ +G+ +G GLG GIV P+ +P +N GLG+
Sbjct: 188 KMMAMMGYKDGMGLGKNEQGIVAPVETTLRP-KNAGLGS 225
>01_01_0489 +
3608720-3608811,3609326-3609431,3609518-3609581,
3609905-3609965,3610017-3610144,3610236-3610385,
3610537-3610791,3611060-3611265,3611469-3611696,
3612161-3612259
Length = 462
Score = 36.3 bits (80), Expect = 0.027
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 114 NVGFKMLQKLGWNEGQGLGVEGSGIVEPI 200
N KM++ +GW EG+ LG G+VEPI
Sbjct: 417 NSAKKMMENMGWKEGEALGKSTKGMVEPI 445
>01_05_0166 + 18844468-18845184,18847394-18847690
Length = 337
Score = 35.1 bits (77), Expect = 0.062
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 126 KMLQKLGWNEGQGLGVEGSGIVEPI 200
+M+ ++GW EGQGLG + GI P+
Sbjct: 173 RMMARMGWKEGQGLGKQEQGITAPL 197
>04_04_0422 +
25098612-25099025,25099500-25099633,25099817-25100067,
25100130-25100494
Length = 387
Score = 34.3 bits (75), Expect = 0.11
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +3
Query: 102 LKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQ 215
L + + +++ ++ + EG GLG G GI++PIN K+
Sbjct: 29 LATNQIVARLMAQMNYEEGTGLGKYGHGIIDPINPTKK 66
>04_04_0489 + 25600543-25601368,25601441-25602282
Length = 555
Score = 33.9 bits (74), Expect = 0.14
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +3
Query: 126 KMLQKLGWNEGQGLGVEGSGIVEPINKAKQ 215
+++ ++ + EG GLG G GI++PIN K+
Sbjct: 104 RLMAQMNYEEGTGLGKYGHGIIDPINPTKK 133
>03_02_0392 - 8070342-8071628
Length = 428
Score = 31.5 bits (68), Expect = 0.76
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 72 PDLSDYKEFK-LKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQP-VQNLGLGAS 245
PD EF+ + + G +L GW+EG+G+G G + + ++ Q LG S
Sbjct: 169 PDHRGLDEFRDVPVEGFGAALLAGYGWSEGKGIGRNNKGDTKVVEYDRRAGTQGLGYNPS 228
Query: 246 TSD 254
+D
Sbjct: 229 EAD 231
>01_05_0604 - 23583244-23584989
Length = 581
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 102 LKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPI 200
L + + +++ ++ + EG GLG G GI++PI
Sbjct: 95 LATNQIVARLMAQMNYEEGAGLGKYGHGIIDPI 127
>05_06_0005 +
24802843-24803101,24804086-24804333,24804417-24804572,
24804956-24805114,24805862-24805929,24806044-24806433,
24806515-24806563,24806636-24806788,24807416-24807589,
24808207-24808362,24808705-24808756,24808830-24808988,
24809058-24809094,24809218-24809252,24809349-24809400,
24809614-24809663,24810590-24811924,24812688-24812825,
24812907-24812957,24813081-24814237
Length = 1625
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 138 KLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGASTSDWCRPMTTSS 281
K W+ G L GS +P + A PVQN + WC+ ++S+
Sbjct: 704 KPSWDNG--LPSFGSDSWQPFSSAALPVQNADGESEVDPWCKKTSSSA 749
>01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-708105,
708462-708702,708783-708857,708932-709017,709451-709523,
709637-709961,710092-711750,711938-713322
Length = 1788
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 63 GKEPDLSDYKEFKLKEDNVGFKMLQ 137
GK L + KEF +K+D +GF++ Q
Sbjct: 1193 GKMKCLQELKEFHVKKDKIGFELAQ 1217
>01_01_0088 + 688792-691441,691629-693013
Length = 1344
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 63 GKEPDLSDYKEFKLKEDNVGFKMLQ 137
GK L + KEF +K+D +GF++ Q
Sbjct: 749 GKMKCLQELKEFHVKKDKIGFELAQ 773
>08_02_0637 +
19571677-19571943,19572036-19572176,19572260-19572331,
19572425-19572523,19572615-19572668,19572804-19572905,
19573169-19573246,19573449-19573518,19573644-19573807,
19574629-19574694
Length = 370
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = +3
Query: 39 EKYSALKNGKEPDLSDYKEFKLKEDNVGFKMLQKLGWNEGQGL 167
+ +S L + + +L DY + KL + + F++ + W++G+ L
Sbjct: 245 KSWSTLADIVKAELKDYPKLKLTQGRMVFEIRPTIKWDKGKAL 287
>07_01_0415 -
3160059-3160445,3160584-3160727,3160903-3160971,
3161072-3161190,3162246-3162321
Length = 264
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 526 TCSVVSTTQRFQIHFNLILGFNLVCLLF 609
T + S Q +Q HF L LG ++VC F
Sbjct: 43 TIAAYSPLQEYQGHFELALGHSMVCTNF 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,945,750
Number of Sequences: 37544
Number of extensions: 300523
Number of successful extensions: 615
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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