Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1026
         (766 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28912| Best HMM Match : No HMM Matches (HMM E-Value=.)              92   5e-19
SB_26512| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   1e-05
SB_35075| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   8e-05
SB_8887| Best HMM Match : G-patch (HMM E-Value=1.2e-08)                44   1e-04
SB_52916| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_49010| Best HMM Match : G-patch (HMM E-Value=5.5e-19)               44   1e-04
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)                  41   0.001
SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)                      30   2.3  
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_47579| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_2246| Best HMM Match : G-patch (HMM E-Value=5.5e-11)                28   7.2  
SB_1893| Best HMM Match : rve (HMM E-Value=0.0043)                     28   7.2  

>SB_28912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 91.9 bits (218), Expect = 5e-19
 Identities = 42/71 (59%), Positives = 53/71 (74%), Gaps = 3/71 (4%)
 Frame = +3

Query: 3   DFLPPEELKKFMEKYSALKNGK---EPDLSDYKEFKLKEDNVGFKMLQKLGWNEGQGLGV 173
           DFLPP+ELKKF+ K   +K  K   + DLSDY EFKL EDN+G++ML+K GW EG+GLG 
Sbjct: 302 DFLPPDELKKFIAKVKQVKGEKGLEDIDLSDYAEFKLTEDNIGYQMLKKAGWEEGKGLGS 361

Query: 174 EGSGIVEPINK 206
           +G GI  PI+K
Sbjct: 362 KGQGITAPIDK 372


>SB_26512| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 421

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
 Frame = +3

Query: 102 LKEDNVGFKMLQKLGWNE-GQGLGVEGSGIVEPINKAKQPVQNLGLGAS 245
           + +DN+G+++L+K+GW   G GLG    G+ EPI       + LGLGAS
Sbjct: 130 IPQDNLGYRLLKKMGWRGYGTGLGKSSQGLAEPITATGVARRELGLGAS 178


>SB_35075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1184

 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 21/48 (43%), Positives = 30/48 (62%)
 Frame = +3

Query: 96  FKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLG 239
           + + EDN G++++ K GW+E +GLG EGSG   P+ K       LGLG
Sbjct: 812 YYISEDNPGYRLMVKSGWDEEKGLGPEGSGRQYPV-KTVLKQDRLGLG 858


>SB_8887| Best HMM Match : G-patch (HMM E-Value=1.2e-08)
          Length = 739

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 19/36 (52%), Positives = 24/36 (66%)
 Frame = +3

Query: 102 LKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKA 209
           +  DN G K+L+K+GW  G+GLG E SG VEP   A
Sbjct: 520 INADNKGRKLLEKMGWKTGEGLGKEKSGRVEPYGHA 555


>SB_52916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 508

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
 Frame = +3

Query: 57  KNGKEPDLSDYKEFKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPI-NKAKQPVQNLG 233
           ++GK+ DL+   +F+     +G  ++++ GW++GQ LG    GI EP+    ++P    G
Sbjct: 443 RSGKDIDLNQVGDFERFTRGIGGSVMRRQGWSQGQSLGSSQPGITEPVPADGQKPSSKRG 502

Query: 234 LG 239
           LG
Sbjct: 503 LG 504


>SB_49010| Best HMM Match : G-patch (HMM E-Value=5.5e-19)
          Length = 263

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
 Frame = +3

Query: 18  EELKKFMEKYSALKNGKEPDLSDYKE---FKLKEDNVGFKMLQKLGWNEGQGLGVEGSGI 188
           +E  K + + + +K  KE +    ++     +   NVGF +LQK+G+ +G GLG EG+G 
Sbjct: 40  DERHKVLNEKNKIKPIKEREKEQREQGMASAIDNSNVGFALLQKMGYKKGAGLGKEGTGR 99

Query: 189 VEPINKAKQPVQNLGLGAST 248
            +PI  A +  +  GLG  T
Sbjct: 100 ADPIPIAIKTDRG-GLGRET 118


>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
          Length = 765

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 16/28 (57%), Positives = 20/28 (71%)
 Frame = +3

Query: 117 VGFKMLQKLGWNEGQGLGVEGSGIVEPI 200
           +G K+LQK+GW  GQ +G  G G VEPI
Sbjct: 626 IGMKLLQKMGWQPGQAIGRTGEGNVEPI 653


>SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)
          Length = 1035

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +3

Query: 114 NVGFKMLQKLGWNEGQGLG 170
           ++G ++L ++GW EGQG+G
Sbjct: 131 SIGNRLLTQMGWREGQGIG 149


>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3297

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 126 KMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGAS 245
           + L+ +G+  G+GLG  G G  E +  +KQ  +  GLG S
Sbjct: 93  RQLESMGYKSGEGLGKYGQGRREILEASKQKGRR-GLGFS 131


>SB_47579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +3

Query: 36  MEKYSALKNGKEPDLSDYKEFKL-KEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAK 212
           + +Y+   + K P  + Y++  L KE+N  +   ++ G+N+         G   P+    
Sbjct: 236 VSRYNGFNDIKRPRSNFYQDLALEKENNCDYGYKRRFGYNKETAKFGNDDGFARPMMPPA 295

Query: 213 QPVQNLGLG 239
             + +LG+G
Sbjct: 296 PRLTDLGIG 304


>SB_2246| Best HMM Match : G-patch (HMM E-Value=5.5e-11)
          Length = 396

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 117 VGFKMLQKLGWNEGQGLGVEGSGI 188
           V   ++ K GW +GQGLG    GI
Sbjct: 234 VASSIMAKYGWKDGQGLGKSEQGI 257


>SB_1893| Best HMM Match : rve (HMM E-Value=0.0043)
          Length = 255

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 430 IHNGLSMVYGIIYSTNNKYFKE 365
           +  G S  YG IY+T + Y+KE
Sbjct: 46  LFKGFSSTYGFIYTTTSPYYKE 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,880,474
Number of Sequences: 59808
Number of extensions: 350131
Number of successful extensions: 913
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)