Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1026
(766 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000263-13|AAO21393.1| 695|Caenorhabditis elegans Hypothetical... 54 1e-07
AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical... 54 1e-07
AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical... 54 1e-07
AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical ... 54 1e-07
AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical ... 54 1e-07
AL032649-4|CAA21703.2| 511|Caenorhabditis elegans Hypothetical ... 50 2e-06
AL032649-3|CAA21702.2| 502|Caenorhabditis elegans Hypothetical ... 50 2e-06
Z81094-5|CAB03149.2| 675|Caenorhabditis elegans Hypothetical pr... 40 0.001
AF536544-1|AAN77185.1| 675|Caenorhabditis elegans SR-related CT... 40 0.001
Z49908-1|CAA90093.1| 816|Caenorhabditis elegans Hypothetical pr... 39 0.004
DQ342049-1|ABC69941.1| 830|Caenorhabditis elegans STIP protein. 39 0.004
AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical ... 37 0.018
Z68319-3|CAA92701.1| 339|Caenorhabditis elegans Hypothetical pr... 36 0.024
AL132949-11|CAB70104.2| 927|Caenorhabditis elegans Hypothetical... 36 0.042
U41007-19|AAA82274.1| 432|Caenorhabditis elegans Hypothetical p... 33 0.22
Z46934-6|CAA87045.3| 371|Caenorhabditis elegans Hypothetical pr... 33 0.29
AF003384-11|AAL08042.1| 487|Caenorhabditis elegans Hypothetical... 32 0.39
AF003384-10|AAB54241.3| 351|Caenorhabditis elegans Hypothetical... 32 0.39
Z32683-1|CAA83621.1| 812|Caenorhabditis elegans Hypothetical pr... 31 0.68
AC024759-3|AAK68433.1| 355|Caenorhabditis elegans Hypothetical ... 31 0.90
AC024759-2|AAM97964.1| 376|Caenorhabditis elegans Hypothetical ... 31 0.90
AC024759-1|AAK73907.1| 376|Caenorhabditis elegans Hypothetical ... 31 0.90
AC024759-4|AAK68434.1| 356|Caenorhabditis elegans Hypothetical ... 30 1.6
U00041-2|AAA50670.1| 128|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z74045-4|CAA98554.2| 924|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z74032-11|CAA98469.2| 924|Caenorhabditis elegans Hypothetical p... 28 6.3
>AF000263-13|AAO21393.1| 695|Caenorhabditis elegans Hypothetical
protein T08B2.5g protein.
Length = 695
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/50 (50%), Positives = 35/50 (70%)
Frame = +3
Query: 102 LKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGASTS 251
L E N+G ++L+ +GW EGQG+G GIV PI +A++ VQ GLGA+ S
Sbjct: 622 LDESNIGNRLLKSMGWKEGQGVGKHAQGIVNPI-EAERFVQGAGLGAAGS 670
>AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical
protein T08B2.5f protein.
Length = 838
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/50 (50%), Positives = 35/50 (70%)
Frame = +3
Query: 102 LKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGASTS 251
L E N+G ++L+ +GW EGQG+G GIV PI +A++ VQ GLGA+ S
Sbjct: 765 LDESNIGNRLLKSMGWKEGQGVGKHAQGIVNPI-EAERFVQGAGLGAAGS 813
>AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical
protein T08B2.5c protein.
Length = 866
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/50 (50%), Positives = 35/50 (70%)
Frame = +3
Query: 102 LKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGASTS 251
L E N+G ++L+ +GW EGQG+G GIV PI +A++ VQ GLGA+ S
Sbjct: 793 LDESNIGNRLLKSMGWKEGQGVGKHAQGIVNPI-EAERFVQGAGLGAAGS 841
>AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical
protein T08B2.5a protein.
Length = 924
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/50 (50%), Positives = 35/50 (70%)
Frame = +3
Query: 102 LKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGASTS 251
L E N+G ++L+ +GW EGQG+G GIV PI +A++ VQ GLGA+ S
Sbjct: 851 LDESNIGNRLLKSMGWKEGQGVGKHAQGIVNPI-EAERFVQGAGLGAAGS 899
>AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical
protein T08B2.5b protein.
Length = 925
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/50 (50%), Positives = 35/50 (70%)
Frame = +3
Query: 102 LKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGASTS 251
L E N+G ++L+ +GW EGQG+G GIV PI +A++ VQ GLGA+ S
Sbjct: 852 LDESNIGNRLLKSMGWKEGQGVGKHAQGIVNPI-EAERFVQGAGLGAAGS 900
>AL032649-4|CAA21703.2| 511|Caenorhabditis elegans Hypothetical
protein Y55D9A.2b protein.
Length = 511
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/51 (47%), Positives = 32/51 (62%)
Frame = +3
Query: 102 LKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGASTSD 254
L NVGFK+L+ +GW+EGQGLG E G VEP+ + GLGA+ +
Sbjct: 431 LDSGNVGFKLLKSMGWSEGQGLGKEKQGHVEPV-ATEVKNNRKGLGANEKE 480
>AL032649-3|CAA21702.2| 502|Caenorhabditis elegans Hypothetical
protein Y55D9A.2a protein.
Length = 502
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/51 (47%), Positives = 32/51 (62%)
Frame = +3
Query: 102 LKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGASTSD 254
L NVGFK+L+ +GW+EGQGLG E G VEP+ + GLGA+ +
Sbjct: 431 LDSGNVGFKLLKSMGWSEGQGLGKEKQGHVEPV-ATEVKNNRKGLGANEKE 480
>Z81094-5|CAB03149.2| 675|Caenorhabditis elegans Hypothetical
protein F58G11.5 protein.
Length = 675
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Frame = +3
Query: 102 LKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQN---LGLGAS 245
L DN G +++ K+GW G+GLG SGIV+P++ + +N +GLG S
Sbjct: 602 LSYDNKGAQLMAKMGWG-GKGLGANESGIVDPVSGGEVRNRNEQFMGLGRS 651
>AF536544-1|AAN77185.1| 675|Caenorhabditis elegans SR-related CTD
associated factor 6 protein.
Length = 675
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Frame = +3
Query: 102 LKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQN---LGLGAS 245
L DN G +++ K+GW G+GLG SGIV+P++ + +N +GLG S
Sbjct: 602 LSYDNKGAQLMAKMGWG-GKGLGANESGIVDPVSGGEVRNRNEQFMGLGRS 651
>Z49908-1|CAA90093.1| 816|Caenorhabditis elegans Hypothetical
protein C07E3.1a protein.
Length = 816
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = +3
Query: 126 KMLQKLGWNEGQGLGVEGSGIVEPI 200
KM+Q +G+ G+GLG +G GIVEP+
Sbjct: 145 KMMQAMGYKPGEGLGAQGQGIVEPV 169
>DQ342049-1|ABC69941.1| 830|Caenorhabditis elegans STIP protein.
Length = 830
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = +3
Query: 126 KMLQKLGWNEGQGLGVEGSGIVEPI 200
KM+Q +G+ G+GLG +G GIVEP+
Sbjct: 159 KMMQAMGYKPGEGLGAQGQGIVEPV 183
>AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical
protein D1037.1 protein.
Length = 786
Score = 36.7 bits (81), Expect = 0.018
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +3
Query: 117 VGFKMLQKLGWNEGQGLGVEGSGIVEPI 200
+G ML+K+GW G+GLG + +G +EP+
Sbjct: 640 IGRLMLEKMGWRPGEGLGKDATGNLEPL 667
>Z68319-3|CAA92701.1| 339|Caenorhabditis elegans Hypothetical
protein T23G7.3 protein.
Length = 339
Score = 36.3 bits (80), Expect = 0.024
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +3
Query: 96 FKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGA 242
+K + + K+++K+GW+EG GLG G + + K K GLGA
Sbjct: 22 WKNDDQKLSKKLMEKMGWSEGDGLGRNRQGNADSV-KLKANTSGRGLGA 69
>AL132949-11|CAB70104.2| 927|Caenorhabditis elegans Hypothetical
protein Y53F4B.13 protein.
Length = 927
Score = 35.5 bits (78), Expect = 0.042
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Frame = +3
Query: 18 EELKKFMEKYSALKNGKEPDLSDYKEFKLKED-------NVGFKMLQKLGWNEGQGLGVE 176
EE + +SA+K G + + +F +E+ V +++ +G G+GLG
Sbjct: 49 EEFMEERASFSAVKRGYQAGDDEEDDFTAEEEPPAKKPLTVAERLMAAMGHKAGEGLGKH 108
Query: 177 GSGIVEPINKAKQPVQNLGLG 239
G GI EPI + Q + GLG
Sbjct: 109 GQGISEPIASSTQRGRT-GLG 128
>U41007-19|AAA82274.1| 432|Caenorhabditis elegans Hypothetical
protein C33H5.17 protein.
Length = 432
Score = 33.1 bits (72), Expect = 0.22
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 15 PEELKKFMEKYSALKNGKEPDLSDYKEFKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVE 194
P + ++ E + LK +++ K VG K++ K+G+ G+GLG GIV
Sbjct: 217 PTKQEQSSESWKELKQETLGNVTVGDLGKWNGGGVGMKLMMKMGYKVGEGLGKRSDGIVH 276
Query: 195 PI 200
I
Sbjct: 277 AI 278
>Z46934-6|CAA87045.3| 371|Caenorhabditis elegans Hypothetical
protein ZK1320.7 protein.
Length = 371
Score = 32.7 bits (71), Expect = 0.29
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +3
Query: 54 LKNGKEPDLSDYKEFKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLG 233
L + P + ++ N+G++++ GW E QGLG G PI + G
Sbjct: 245 LNDRNAPGAAPQSGIQIGPSNIGYRLMCASGWTEEQGLGRNSDGQRFPIRTILKR-NRAG 303
Query: 234 LGA 242
LGA
Sbjct: 304 LGA 306
>AF003384-11|AAL08042.1| 487|Caenorhabditis elegans Hypothetical
protein K07B1.7b protein.
Length = 487
Score = 32.3 bits (70), Expect = 0.39
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 108 EDNVGFKMLQKLGWNEGQGLGVEGSGIVEPI 200
+ +G ML K+GW G GLG G V P+
Sbjct: 396 QKGIGGSMLAKMGWKPGTGLGKNEQGRVVPV 426
>AF003384-10|AAB54241.3| 351|Caenorhabditis elegans Hypothetical
protein K07B1.7a protein.
Length = 351
Score = 32.3 bits (70), Expect = 0.39
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 108 EDNVGFKMLQKLGWNEGQGLGVEGSGIVEPI 200
+ +G ML K+GW G GLG G V P+
Sbjct: 244 QKGIGGSMLAKMGWKPGTGLGKNEQGRVVPV 274
>Z32683-1|CAA83621.1| 812|Caenorhabditis elegans Hypothetical
protein R07E5.1 protein.
Length = 812
Score = 31.5 bits (68), Expect = 0.68
Identities = 9/21 (42%), Positives = 18/21 (85%)
Frame = +3
Query: 111 DNVGFKMLQKLGWNEGQGLGV 173
+++G +ML+ +GW EG+G+G+
Sbjct: 146 NSIGVRMLRSMGWREGRGIGL 166
>AC024759-3|AAK68433.1| 355|Caenorhabditis elegans Hypothetical
protein Y37E11AR.3a protein.
Length = 355
Score = 31.1 bits (67), Expect = 0.90
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Frame = +3
Query: 99 KLKEDNVGFKMLQKLG---WNEGQGLGVEGSG-IVEPIN--KAKQPVQNLGLGASTSDWC 260
K+ + N K LG W EGQG+GV+GS V +N ++ + V+N G + + WC
Sbjct: 155 KITDRNPQIKWFVPLGMKKWMEGQGIGVDGSSTAVTELNWGESSEFVKN---GKTYTIWC 211
Query: 261 RP 266
P
Sbjct: 212 LP 213
>AC024759-2|AAM97964.1| 376|Caenorhabditis elegans Hypothetical
protein Y37E11AR.3c protein.
Length = 376
Score = 31.1 bits (67), Expect = 0.90
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Frame = +3
Query: 99 KLKEDNVGFKMLQKLG---WNEGQGLGVEGSG-IVEPIN--KAKQPVQNLGLGASTSDWC 260
K+ + N K LG W EGQG+GV+GS V +N ++ + V+N G + + WC
Sbjct: 176 KITDRNPQIKWFVPLGMKKWMEGQGIGVDGSSTAVTELNWGESSEFVKN---GKTYTIWC 232
Query: 261 RP 266
P
Sbjct: 233 LP 234
>AC024759-1|AAK73907.1| 376|Caenorhabditis elegans Hypothetical
protein Y37E11AR.3b protein.
Length = 376
Score = 31.1 bits (67), Expect = 0.90
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Frame = +3
Query: 99 KLKEDNVGFKMLQKLG---WNEGQGLGVEGSG-IVEPIN--KAKQPVQNLGLGASTSDWC 260
K+ + N K LG W EGQG+GV+GS V +N ++ + V+N G + + WC
Sbjct: 176 KITDRNPQIKWFVPLGMKKWMEGQGIGVDGSSTAVTELNWGESSEFVKN---GKTYTIWC 232
Query: 261 RP 266
P
Sbjct: 233 LP 234
>AC024759-4|AAK68434.1| 356|Caenorhabditis elegans Hypothetical
protein Y37E11AR.4 protein.
Length = 356
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 147 WNEGQGLGVEGSGIVEPIN--KAKQPVQNLGLGASTSDWCRPMTTSSTR 287
W + QG+G +GS V +N ++ + V+N G + + WC P S R
Sbjct: 176 WMKNQGIGADGSNTVTELNWGESSEFVKN---GKTITIWCLPAQHSGQR 221
>U00041-2|AAA50670.1| 128|Caenorhabditis elegans Hypothetical
protein C03B8.3 protein.
Length = 128
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +3
Query: 15 PEELKKFMEKYSALKNGKEPDLSDYKEFKLKEDNVGFKML 134
PEEL+ F +YS L NG + D +D K F KE G + L
Sbjct: 31 PEELRPFFNQYSVLPNGIQND-ADAKLFS-KELQPGERKL 68
>Z74045-4|CAA98554.2| 924|Caenorhabditis elegans Hypothetical
protein T27F2.2 protein.
Length = 924
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 402 P*TIDRPLCISKYYRKHCYIERN 470
P T+ P I YY +HC+I +N
Sbjct: 174 PKTVIEPQDIGSYYYRHCFISKN 196
>Z74032-11|CAA98469.2| 924|Caenorhabditis elegans Hypothetical
protein T27F2.2 protein.
Length = 924
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 402 P*TIDRPLCISKYYRKHCYIERN 470
P T+ P I YY +HC+I +N
Sbjct: 174 PKTVIEPQDIGSYYYRHCFISKN 196
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,508,359
Number of Sequences: 27780
Number of extensions: 295482
Number of successful extensions: 732
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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