Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1026
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    25   0.58 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   1.3  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   1.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.1  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   5.4  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   5.4  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 13/57 (22%), Positives = 21/57 (36%)
 Frame = -1

Query: 439 YLEIHNGLSMVYGIIYSTNNKYFKEFLIIWSAWIIQWIRSESVSEHHAFPVRVELVV 269
           Y  +     +   I Y     Y    LI+  +W+  WI  E+ S   A  +   L +
Sbjct: 228 YQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTM 284


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = -1

Query: 361 LIIWSAWIIQWIRSESVSEHHAFPVRVELVVIG-RHQSEVDAPSPRFCT 218
           LI+  +W+  WI  E+ S+     +   L +      S  D P  R+ T
Sbjct: 257 LIVVLSWVSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLPKVRYAT 305


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 394 YSTNNKYFKEFLIIWSAWIIQWIRSESV 311
           Y   + Y    LI+  +WI  WI+ E++
Sbjct: 215 YHLFHTYIPSALIVVMSWIAFWIKPEAI 242


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -1

Query: 394 YSTNNKYFKEFLIIWSAWIIQWIRSESVSEHHAFPVRVELVVIGRH-QSEVDAP 236
           Y   + Y    LI+  +W+  WI+ E+        V   L +  +H +S+   P
Sbjct: 246 YYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLP 299


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 430 IHNGLSMVYGIIYSTNNK 377
           +HN +  ++ II STN K
Sbjct: 55  VHNHIQNIFKIIKSTNEK 72


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 430 IHNGLSMVYGIIYSTNNK 377
           +HN +  ++ II STN K
Sbjct: 38  VHNHIQNIFKIIKSTNEK 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,834
Number of Sequences: 438
Number of extensions: 3706
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)